View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_low_86 (Length: 308)

Name: NF19927_low_86
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_low_86
NF19927_low_86
[»] chr4 (6 HSPs)
chr4 (15-261)||(17653280-17653525)
chr4 (99-239)||(16426259-16426398)
chr4 (114-267)||(14692083-14692236)
chr4 (99-255)||(20575794-20575954)
chr4 (103-191)||(14691974-14692062)
chr4 (54-88)||(16426101-16426135)
[»] chr8 (9 HSPs)
chr8 (99-255)||(5931004-5931159)
chr8 (115-237)||(30868818-30868938)
chr8 (115-237)||(34206596-34206716)
chr8 (103-267)||(30868638-30868802)
chr8 (103-267)||(34206732-34206894)
chr8 (106-165)||(26227996-26228055)
chr8 (53-88)||(34206422-34206457)
chr8 (54-88)||(5931284-5931318)
chr8 (54-88)||(30869078-30869112)
[»] chr3 (7 HSPs)
chr3 (99-251)||(21664377-21664528)
chr3 (99-255)||(54708875-54709030)
chr3 (99-239)||(15826371-15826510)
chr3 (99-239)||(10312071-10312210)
chr3 (53-88)||(10311859-10311894)
chr3 (54-88)||(21664228-21664262)
chr3 (54-86)||(15826235-15826267)
[»] chr7 (5 HSPs)
chr7 (102-267)||(29200074-29200239)
chr7 (115-237)||(12620451-12620571)
chr7 (103-267)||(12620271-12620435)
chr7 (54-88)||(12620711-12620745)
chr7 (54-88)||(29200357-29200391)
[»] scaffold0499 (1 HSPs)
scaffold0499 (99-237)||(2228-2365)
[»] scaffold0483 (4 HSPs)
scaffold0483 (99-237)||(1374-1511)
scaffold0483 (114-267)||(12706-12859)
scaffold0483 (103-267)||(1527-1691)
scaffold0483 (103-191)||(12597-12685)
[»] scaffold0109 (2 HSPs)
scaffold0109 (99-237)||(46161-46298)
scaffold0109 (103-267)||(46314-46478)
[»] chr6 (7 HSPs)
chr6 (103-267)||(12761138-12761303)
chr6 (99-267)||(16316057-16316225)
chr6 (99-237)||(12761318-12761454)
chr6 (115-237)||(14645436-14645556)
chr6 (103-267)||(14645572-14645737)
chr6 (100-221)||(16316253-16316372)
chr6 (54-88)||(14645262-14645296)
[»] scaffold0150 (2 HSPs)
scaffold0150 (103-267)||(11660-11823)
scaffold0150 (115-237)||(11839-11959)
[»] chr2 (1 HSPs)
chr2 (99-267)||(28754540-28754708)
[»] chr1 (1 HSPs)
chr1 (99-255)||(48971354-48971509)
[»] scaffold0933 (3 HSPs)
scaffold0933 (115-237)||(117-237)
scaffold0933 (103-159)||(45-101)
scaffold0933 (54-88)||(377-411)
[»] scaffold0018 (3 HSPs)
scaffold0018 (173-252)||(124001-124080)
scaffold0018 (100-234)||(123791-123923)
scaffold0018 (54-88)||(123644-123678)
[»] chr5 (3 HSPs)
chr5 (53-88)||(29284859-29284894)
chr5 (100-150)||(29285019-29285069)
chr5 (181-236)||(42936268-42936323)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 17653525 - 17653280
Alignment:
Q  15 ataatatttatacgtggttgaagtgggagttagtgatgccactactacaaaaatgggcttatatagcactttttgtcnnnnnnncgctagcaaagattct 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||       ||||||||||||||||    
T  17653525 ataatatttatacgtggttgaagtgggagttagtgatgtcactactacaaaaatgggtttatatagcactttttgtcaaaaag-cgctagcaaagattct 17653427  T
Q  115 ccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgttttaaaacgctatgta 214  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  17653426 acttagttagcgctttcaataataaatgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcatcttttattttaaaacgctatgta 17653327  T
Q  215 acactaggtttagatagcgctttatgcatgaaaaaagcgctggaaaa 261  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  17653326 acactaggtttagatagcgctttatgcataaaaaaagcgctggaaaa 17653280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 16426259 - 16426398
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||  ||||||||| ||| |||| ||||| ||||||    
T  16426259 cgctagcaaagattctccttagatagcgctttcaataataagcgccatctaaaaggggtttaaaataacgcatacactggtagaaaacagcgt-ttttgt 16426357  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgctttat 239  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  16426358 ttaaaaacgctatgtaacactaggtttagatagcgctttat 16426398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 14692083 - 14692236
Alignment:
Q  114 tccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgttttaaaacgctatgt 213  Q
    ||||||| ||||||||||||||||||||||| ||||||||| || | ||||| ||  | ||||||||||||||||| | |||||||||||||||||||||    
T  14692083 tccttagatagcgctttcaataataaacgccgtctaaaaggtgtctgaaataatgttttcactagtaaaaaatagcat-ttttgttttaaaacgctatgt 14692181  T
Q  214 aacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    ||||||||||||| ||||||||||| ||||||||||| |||| |||||| |||||    
T  14692182 aacactaggtttatatagcgctttacgcatgaaaaaatcgctaggaaaagcatta 14692236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 99 - 255
Target Start/End: Original strand, 20575794 - 20575954
Alignment:
Q  99 cgctagcaaagattctccttagttagcgc----tttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaat-agcgtct 193  Q
    |||||||| ||||||||||||| ||||||    |||||| |||||||||||||||||| | ||||||||||  |||| | |||||||||||  ||| | |    
T  20575794 cgctagcatagattctccttagatagcgcgcgctttcaaaaataaacgccatctaaaaagggtttaaaataacgcatgcgctagtaaaaaaacagcat-t 20575892  T
Q  194 tttgttttaaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct 255  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| || ||||||||||||    
T  20575893 tttgttttaaaacgctatgtaacactaggtttagatttcgctttatacaagaaaaaagcgct 20575954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 14691974 - 14692062
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgt 191  Q
    ||||||| ||||| |||  |||||||||| |||||||| |||||||||||| |||||||||||   ||| |||| ||||||||||||||    
T  14691974 agcaaagcttctctttaaatagcgctttcgataataaaagccatctaaaagacgtttaaaataacacatgcactcgtaaaaaatagcgt 14692062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 16426101 - 16426135
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttttt 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  16426101 cactactacaaaaatgggcttatatagcgcttttt 16426135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 99 - 255
Target Start/End: Complemental strand, 5931159 - 5931004
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||    |||||||||||| ||||||||| |||||||    
T  5931159 cgctagcaaagattctctttagatagcgctttcgataataaacgccatctaaaagacgtttaaaattacacatacactagtataaaatagcg-cttttgt 5931061  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct 255  Q
    |||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  5931060 tttaaaacgctatgtaacactaggtttagatagcactttatggaggaaaaaagcgct 5931004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 30868938 - 30868818
Alignment:
Q  115 ccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgttttaaaacgctatgta 214  Q
    |||||| ||||||||| |||| ||| |||||||||||||||||||||||||  |||| ||||   || ||||||||| || ||||| |||||||||||||    
T  30868938 ccttagatagcgcttttaatattaagcgccatctaaaaggcgtttaaaataacgcattcact-tcaagaaatagcgt-ttatgtttgaaaacgctatgta 30868841  T
Q  215 acactaggtttagatagcgcttt 237  Q
    |||| ||||||||||||||||||    
T  30868840 acaccaggtttagatagcgcttt 30868818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 34206596 - 34206716
Alignment:
Q  115 ccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgttttaaaacgctatgta 214  Q
    |||||| ||||||||| |||| ||||||||||||||||||| |||||||||  |||| ||||   |||||||||||| || ||||| |||||||||||||    
T  34206596 ccttagatagcgcttttaatattaaacgccatctaaaaggcttttaaaataacgcattcact-tcaaaaaatagcgt-ttatgtttgaaaacgctatgta 34206693  T
Q  215 acactaggtttagatagcgcttt 237  Q
    |||| ||||||||||||| ||||    
T  34206694 acaccaggtttagatagcacttt 34206716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 30868802 - 30868638
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtttta 202  Q
    |||||||||  || |||| ||||||||| |||| |||||||| ||||||||||||||  ||||  |  | || |||||||||||||||| |||  |   |    
T  30868802 agcaaagataatctttagatagcgcttttaatattaaacgccgtctaaaaggcgtttggaataacgttttcattagtaaaaaatagcgt-tttaataaaa 30868704  T
Q  203 aaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    |||||||||||||||||| ||||| |||||||||||  ||||||||||||||| |||||| |||||    
T  30868703 aaacgctatgtaacactatgtttatatagcgctttacacatgaaaaaagcgctaggaaaagcatta 30868638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 267
Target Start/End: Original strand, 34206732 - 34206894
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtttta 202  Q
    |||||||||  || |||| ||| ||||| ||||||||||||| |||||||||||||| ||  || |  | || ||||||||||||||||  |||  |  |    
T  34206732 agcaaagataatctttagatagagcttttaataataaacgccgtctaaaaggcgtttgaataac-gtttccattagtaaaaaatagcgt--tttaataaa 34206828  T
Q  203 aaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    |||||||||||||||||| ||||| |||||||||||  ||||||||||||||| |||||| |||||    
T  34206829 aaacgctatgtaacactatgtttatatagcgctttacacatgaaaaaagcgctaggaaaagcatta 34206894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 26228055 - 26227996
Alignment:
Q  106 aaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaata 165  Q
    ||||||||||||||| |||||||||||| |||||| |||| |||| | | ||||||||||    
T  26228055 aaagattctccttagatagcgctttcaaaaataaatgccacctaataagggtttaaaata 26227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 34206422 - 34206457
Alignment:
Q  53 ccactactacaaaaatgggcttatatagcacttttt 88  Q
    ||||||||||||||||||||||||||||| ||||||    
T  34206422 ccactactacaaaaatgggcttatatagcgcttttt 34206457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 5931318 - 5931284
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttttt 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  5931318 cactactacaaaaatgggcttatatagcgcttttt 5931284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 30869112 - 30869078
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttttt 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  30869112 cactactacaaaaatgggcttatatagcgcttttt 30869078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 99 - 251
Target Start/End: Original strand, 21664377 - 21664528
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||   |||||||||||||||| ||||| |||||||    
T  21664377 cgctagcaaagattctctttagatagcgctttcgataataaacgccatctaaaagacgtttaaaataacacatacactagtaaaaagtagcg-cttttgt 21664475  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaag 251  Q
    |||||||||||||||||||||||||||||||||| ||||||| | ||||||||    
T  21664476 tttaaaacgctatgtaacactaggtttagatagcactttatggaggaaaaaag 21664528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 99 - 255
Target Start/End: Original strand, 54708875 - 54709030
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||    |||||||||||| ||||||||| |||||||    
T  54708875 cgctagcaaagattctctttagatagcgctttcgataataaacgccatctaaaagacgtttaaaattacacatacactagtataaaatagcg-cttttgt 54708973  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct 255  Q
    |||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||    
T  54708974 tttaaaacgctatgtaacactaggtttagatagcactttatggaggaaaaaagcgct 54709030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 15826371 - 15826510
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||  ||||||||| ||| |||| ||||| ||||||    
T  15826371 cgctagcaaagattctccttagatagcgctttcaataataagcgccatgtaaaaggggtttaaaataacgcatacacttgtagaaaacagcgt-ttttgt 15826469  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgctttat 239  Q
    || ||||||||||||||||||||||||||||||| ||||||    
T  15826470 ttaaaaacgctatgtaacactaggtttagatagcactttat 15826510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 10312071 - 10312210
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    |||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||||||||  ||||||||| ||| |||| ||||| ||||||    
T  10312071 cgctggcaaagattctccttagatagcgctttcattaataagcgccatctaaaaggggtttaaaataacgcatacacttgtagaaaacagcgt-ttttgt 10312169  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgctttat 239  Q
    || ||||||||||||||||||||||||||||| ||||||||    
T  10312170 ttaaaaacgctatgtaacactaggtttagataacgctttat 10312210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 10311859 - 10311894
Alignment:
Q  53 ccactactacaaaaatgggcttatatagcacttttt 88  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10311859 ccactactacaaaaatgggcttatatagcgcttttt 10311894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 21664228 - 21664262
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttttt 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  21664228 cactactacaaaaatgggcttatatagcgcttttt 21664262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 15826235 - 15826267
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttt 86  Q
    |||||||||||||||||||||||||||| ||||    
T  15826235 cactactacaaaaatgggcttatatagcgcttt 15826267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 267
Target Start/End: Complemental strand, 29200239 - 29200074
Alignment:
Q  102 tagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtttt 201  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||||||||| ||||||||||  ||||  ||||| |||||  ||| | |||||||||    
T  29200239 tagcaaagaccctccttagatagcgctttcaataataaacgccatctaaaaggggtttaaaataacgcatgtactagcaaaaagcagcat-ttttgtttt 29200141  T
Q  202 aaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    |||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||| |||||    
T  29200140 aaaacgctatgtaacattaggtttagatagcgctttatacaagaaaaaagcgctaggaaaagcatta 29200074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 12620571 - 12620451
Alignment:
Q  115 ccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgttttaaaacgctatgta 214  Q
    |||||| |||| |||| |||| ||||||||||||||||||| |||||||||  |||| ||||   |||||||||||| || ||||| |||||||||||||    
T  12620571 ccttagatagctcttttaatattaaacgccatctaaaaggcatttaaaataacgcattcacttc-aaaaaatagcgt-ttatgtttgaaaacgctatgta 12620474  T
Q  215 acactaggtttagatagcgcttt 237  Q
    |||| ||||||||||||||||||    
T  12620473 acaccaggtttagatagcgcttt 12620451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 12620435 - 12620271
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtttta 202  Q
    |||||||||  || |||| ||||||||| ||||||||||||| ||||||||||||||  ||||  |  | || |||||||||||||||| |||  |   |    
T  12620435 agcaaagataatctttagatagcgcttttaataataaacgccgtctaaaaggcgtttggaataacgttttcattagtaaaaaatagcgt-tttaataaaa 12620337  T
Q  203 aaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    |||||||||||||||||| ||||| |||||||||||  ||||||||||||||| |||||| |||||    
T  12620336 aaacgctatgtaacactatgtttatatagcgctttacacatgaaaaaagcgctaggaaaagcatta 12620271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 12620745 - 12620711
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttttt 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  12620745 cactactacaaaaatgggcttatatagcgcttttt 12620711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 29200391 - 29200357
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttttt 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  29200391 cactactacaaaaatgggcttatatagcgcttttt 29200357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 2365 - 2228
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||||||||| |||||||||| |||| |||||| ||||||| |||||||| |||| |||||||||| ||||| ||| | ||||||| ||||| ||||||    
T  2365 cgctagcaaaggttctccttagatagccctttcagtaataaaagccatctataaggggtttaaaataatgcatgcacaattaaaaaacagcgt-ttttgt 2267  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgcttt 237  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2266 tttaaaacgctatgtaacactaggtttagatagcgcttt 2228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 1374 - 1511
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||||||||||||||| |||  |||||||||| ||||||||||||||||||||| |||||||||||   ||| ||||||||||||||||||| || |||    
T  1374 cgctagcaaagattctctttaaatagcgctttcgataataaacgccatctaaaagacgtttaaaataacacatgcactagtaaaaaatagcgt-ttatgt 1472  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgcttt 237  Q
    || ||||||||||||||||||||||||| ||||||||||    
T  1473 ttgaaaacgctatgtaacactaggtttacatagcgcttt 1511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 12706 - 12859
Alignment:
Q  114 tccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgttttaaaacgctatgt 213  Q
    ||||||| ||||||||||||||||||||||| ||||||||| || | ||||| ||  | ||||||||||||||||| | |||||||||||||||||||||    
T  12706 tccttagatagcgctttcaataataaacgccgtctaaaaggtgtctgaaataatgttttcactagtaaaaaatagcat-ttttgttttaaaacgctatgt 12804  T
Q  214 aacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    ||||||||||||| ||||||||||| ||||||||||| |||| |||||| |||||    
T  12805 aacactaggtttatatagcgctttacgcatgaaaaaatcgctaggaaaagcatta 12859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 267
Target Start/End: Original strand, 1527 - 1691
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtttta 202  Q
    |||||||||  |||| || ||||||||||||||||||||||| |||||||||||| | |||||  |  | ||||||||||||||||||| ||||||||||    
T  1527 agcaaagataatcctcagatagcgctttcaataataaacgccgtctaaaaggcgtctgaaataacgttttcactagtaaaaaatagcgt-ttttgtttta 1625  T
Q  203 aaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    ||||||||||||| |||||||||| |||||||| || |||||||||||||||| |||||| |||||    
T  1626 aaacgctatgtaatactaggtttatatagcgctctacgcatgaaaaaagcgctaggaaaagcatta 1691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 12597 - 12685
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgt 191  Q
    ||||||| ||||| |||  |||||||||| |||||||| |||||||||||| |||||||||||   ||| |||| ||||||||||||||    
T  12597 agcaaagcttctctttaaatagcgctttcgataataaaagccatctaaaagacgtttaaaataacacatgcactcgtaaaaaatagcgt 12685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 46161 - 46298
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||||||||||||||| |||  |||||||||| ||||||||||||||||||||| |||||||||||   ||| ||||||||||||||||||| || |||    
T  46161 cgctagcaaagattctctttaaatagcgctttcgataataaacgccatctaaaagacgtttaaaataacacatgcactagtaaaaaatagcgt-ttatgt 46259  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgcttt 237  Q
    || ||||||||||||||||||||||||| ||||||||||    
T  46260 ttgaaaacgctatgtaacactaggtttacatagcgcttt 46298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 267
Target Start/End: Original strand, 46314 - 46478
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtttta 202  Q
    |||||||||  |||| || ||||||||||||||||||||||| |||||||||||| | |||||  |  | ||||||||||||||||||| ||||||||||    
T  46314 agcaaagataatcctcagatagcgctttcaataataaacgccgtctaaaaggcgtctgaaataacgttttcactagtaaaaaatagcgt-ttttgtttta 46412  T
Q  203 aaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    ||||||||||||| |||||||||| |||||||| || |||||||||||||||| |||||| |||||    
T  46413 aaacgctatgtaatactaggtttatatagcgctctacgcatgaaaaaagcgctaggaaaagcatta 46478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 12761303 - 12761138
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaa-tagcgtcttttgtttt 201  Q
    |||||||||  || |||| ||||||||||||||||||||||  |||||||||||||| |||||  |  | ||||||||||||| |||||| |||||||||    
T  12761303 agcaaagataatcattaggtagcgctttcaataataaacgctgtctaaaaggcgtttgaaataacgttttcactagtaaaaaaatagcgt-ttttgtttt 12761205  T
Q  202 aaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    ||||||||||||||||||| ||||| |||||||||||  ||||||||||||||| |||||| |||||    
T  12761204 aaaacgctatgtaacactaagtttatatagcgctttacacatgaaaaaagcgctaggaaaaacatta 12761138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 99 - 267
Target Start/End: Complemental strand, 16316225 - 16316057
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||| ||||||||  |||||| ||||||||||||||| ||||||| |||||||||| ||| |||||  |  | |||||||||||| |||||| ||||||    
T  16316225 cgctaacaaagattaaccttagatagcgctttcaataacaaacgccgtctaaaaggcatttgaaataacgttttcactagtaaaaagtagcgt-ttttgt 16316127  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||||||| ||||||| |||||| |||||    
T  16316126 tttaaaatgctatgtaacacttggtttatatagcgctttacgcatgaaagaagcgctaggaaaagcatta 16316057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 12761454 - 12761318
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||||||||||||  |||||| |||||||||  ||||||||||||||||||||||| |||||||||  |||| ||||   |||||||||||| || |||    
T  12761454 cgctagcaaagattaaccttagatagcgctttttataataaacgccatctaaaaggcatttaaaataacgcattcact-tcaaaaaatagcgt-ttatgt 12761357  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgcttt 237  Q
    || |||| |||||||||||||||||||||||||||||||    
T  12761356 ttgaaaaagctatgtaacactaggtttagatagcgcttt 12761318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 14645436 - 14645556
Alignment:
Q  115 ccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgttttaaaacgctatgta 214  Q
    |||||| ||||||||| |||| |||||||||||||||||||||||||||||  || | ||||   |||||||||||| || ||||| |||||||||||||    
T  14645436 ccttagatagcgcttttaatattaaacgccatctaaaaggcgtttaaaataacgccttcact-tcaaaaaatagcgt-ttatgtttgaaaacgctatgta 14645533  T
Q  215 acactaggtttagatagcgcttt 237  Q
    |||| ||||||||||||||||||    
T  14645534 acaccaggtttagatagcgcttt 14645556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 103 - 267
Target Start/End: Original strand, 14645572 - 14645737
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtttta 202  Q
    |||||||||  || |||| ||||||||| ||||||||||||||||||||||||||||  ||||  |  | || |||||||||||||||| ||       |    
T  14645572 agcaaagataatctttagatagcgcttttaataataaacgccatctaaaaggcgtttggaataacgttttcattagtaaaaaatagcgttttaataaaaa 14645671  T
Q  203 aaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    |||||||||||||||||| ||||| |||||||||||  ||||||||||||||| |||||| |||||    
T  14645672 aaacgctatgtaacactatgtttatatagcgctttacacatgaaaaaagcgctaggaaaagcatta 14645737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 16316372 - 16316253
Alignment:
Q  100 gctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtt 199  Q
    |||| ||||||||  |||||| ||||||||||||||||||| ||||||||||| ||||||||||||   |||  |||  ||||||||||| | || ||||    
T  16316372 gctaacaaagattaaccttaggtagcgctttcaataataaaagccatctaaaatgcgtttaaaataacacattaact-ttaaaaaatagc-ttttatgtt 16316275  T
Q  200 ttaaaacgctatgtaacactag 221  Q
    | ||||||||||||||||||||    
T  16316274 tgaaaacgctatgtaacactag 16316253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 14645262 - 14645296
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttttt 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  14645262 cactactacaaaaatgggcttatatagcgcttttt 14645296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 11823 - 11660
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtttta 202  Q
    |||||||||  ||||||| ||||||||||| ||||||||| | ||||||||||||  ||||||  |  | |||||||||||| |||||| ||||||||||    
T  11823 agcaaagataatccttagatagcgctttcagtaataaacgtcgtctaaaaggcgtcaaaaatatcgttttcactagtaaaaa-tagcgt-ttttgtttta 11726  T
Q  203 aaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    |||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||| |||||    
T  11725 aaacgctatgtaacactaggtttatatagcactttacgcatgaaaaaagcgctaggaaaagcatta 11660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 11959 - 11839
Alignment:
Q  115 ccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgttttaaaacgctatgta 214  Q
    |||||| |||||||||||| |||||||||  ||||||||||||  ||||||  |  | ||||||||||||||||||| || ||||| |||| |||| |||    
T  11959 ccttagatagcgctttcaaaaataaacgcg-tctaaaaggcgtcaaaaatatcgttttcactagtaaaaaatagcgt-ttatgtttgaaaatgctaagta 11862  T
Q  215 acactaggtttagatagcgcttt 237  Q
    |||| | ||||||||||||||||    
T  11861 acaccatgtttagatagcgcttt 11839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 99 - 267
Target Start/End: Original strand, 28754540 - 28754708
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||||||||  |||| ||||| ||||||||||||||||||| || |||| ||||| |||||||||  ||||  ||| |||||||  |||| | || |||    
T  28754540 cgctagcaaaagttcttcttagatagcgctttcaataataaatgctatcttaaaggggtttaaaattatgcaagcacaagtaaaatgtagcat-ttatgt 28754638  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct-ggaaaatcatta 267  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||    
T  28754639 tttaaaacgctatgtaacactaggtttagatagcgctttatacaggaaaaaagcgctaggaaaaacatta 28754708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 255
Target Start/End: Original strand, 48971354 - 48971509
Alignment:
Q  99 cgctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgt 198  Q
    ||||||||||| |||||||||| |||| ||||||| |||||||| || |||||||| | ||||||||  |||  ||||||  ||||| ||| | ||||||    
T  48971354 cgctagcaaaggttctccttagatagcactttcaaaaataaacgtcacctaaaagggggttaaaataacgcaagcactaggtaaaaacagctt-ttttgt 48971452  T
Q  199 tttaaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagcgct 255  Q
    |||||||||||||| || |||||||||||||  |||||||| || ||||||||||||    
T  48971453 tttaaaacgctatgcaatactaggtttagatgacgctttatacaggaaaaaagcgct 48971509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 237 - 117
Alignment:
Q  115 ccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgttttaaaacgctatgta 214  Q
    |||||| ||||||||| |||| ||| |||||||||||||||||||||||||  |||| ||||   |||||||||||| || ||||| |||||||||||||    
T  237 ccttagatagcgcttttaatattaagcgccatctaaaaggcgtttaaaataacgcattcact-tcaaaaaatagcgt-ttatgtttgaaaacgctatgta 140  T
Q  215 acactaggtttagatagcgcttt 237  Q
    |||| ||||||||||||||||||    
T  139 acaccaggtttagatagcgcttt 117  T

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Target: scaffold0933; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 101 - 45
Alignment:
Q  103 agcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgttt 159  Q
    |||||||||  || |||| ||||||||| ||||||||||||| ||||||||||||||    
T  101 agcaaagataatctttagatagcgcttttaataataaacgccgtctaaaaggcgttt 45  T

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Target: scaffold0933; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 411 - 377
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttttt 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  411 cactactacaaaaatgggcttatatagcgcttttt 377  T

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Target: scaffold0018 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 124001 - 124080
Alignment:
Q  173 cactagtaaaaaatagcgtcttttgttttaaaacgctatgtaacactaggtttagatagcgctttatgcatgaaaaaagc 252  Q
    |||||||||| |||||| | ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||    
T  124001 cactagtaaataatagccttttttgttttaaaaagctatgtaacactaggtttatatagcgctttaggcatgaaaaaagc 124080  T

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Target: scaffold0018; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 123791 - 123923
Alignment:
Q  100 gctagcaaagattctccttagttagcgctttcaataataaacgccatctaaaaggcgtttaaaatactgcatacactagtaaaaaatagcgtcttttgtt 199  Q
    |||||||||||||  |||||| ||||||||| ||||||||||||||||||||||| ||||||||||  |||| | ||   ||| |||||||| || ||||    
T  123791 gctagcaaagattaaccttagatagcgcttttaataataaacgccatctaaaaggggtttaaaataacgcattccct-tcaaacaatagcgt-ttatgtt 123888  T
Q  200 ttaaaacgctatgtaacactaggtttagatagcgc 234  Q
    | |||| ||||||||||| ||||||||||||||||    
T  123889 tgaaaatgctatgtaacattaggtttagatagcgc 123923  T

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Target: scaffold0018; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 123644 - 123678
Alignment:
Q  54 cactactacaaaaatgggcttatatagcacttttt 88  Q
    |||||||||||||||||||||||||||| ||||||    
T  123644 cactactacaaaaatgggcttatatagcgcttttt 123678  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 29284859 - 29284894
Alignment:
Q  53 ccactactacaaaaatgggcttatatagcacttttt 88  Q
    ||||||||||||||||||||||||||||| ||||||    
T  29284859 ccactactacaaaaatgggcttatatagcgcttttt 29284894  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 29285019 - 29285069
Alignment:
Q  100 gctagcaaagattctccttagttagcgctttcaataataaacgccatctaa 150  Q
    |||||||||| || ||||||| ||||||||| || ||||||||||||||||    
T  29285019 gctagcaaaggttttccttagatagcgcttttaaaaataaacgccatctaa 29285069  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 42936268 - 42936323
Alignment:
Q  181 aaaaatagcgtcttttgttttaaaa-cgctatgtaacactaggtttagatagcgctt 236  Q
    ||||||||||| ||||||||||||| |||||||||||| || ||||||||| |||||    
T  42936268 aaaaatagcgt-ttttgttttaaaagcgctatgtaacaatatgtttagataacgctt 42936323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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