View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_88 (Length: 305)
Name: NF19927_low_88
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 32940483 - 32940758
Alignment:
| Q |
20 |
acgctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttgagtt |
119 |
Q |
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| T |
32940483 |
acgctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttgagtt |
32940582 |
T |
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| Q |
120 |
ttataataaggttattaattaaatattacatcttggctttacaagtttcgtaagaaataaataatatatgttcttgaattatggacagatttatttattt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32940583 |
ttataataaggttattaattaaatattacatcttggctttacaagtttcgtaagaaataaataatatatgttcttgaattatggacagatttatttattt |
32940682 |
T |
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| Q |
220 |
tttcttcttaaattactatcgttacttaaacttttgttaaagcatgtatgaattataatatcttcattgtgttcat |
295 |
Q |
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| T |
32940683 |
tttcttcttaaattactatcgttacttaaacttttgttaatgcatgtatgagttataatatcttcattgtgttcat |
32940758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 32910405 - 32910514
Alignment:
| Q |
22 |
gctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttgagtttt |
121 |
Q |
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| T |
32910405 |
gctgtcgtgtttgatgctggtagcactggtagccgtattcatgtttaccattttgatcagaacttagatcttcttcatattggcaaagatgttgagtttt |
32910504 |
T |
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| Q |
122 |
ataataaggt |
131 |
Q |
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| T |
32910505 |
ttaataaggt |
32910514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 32921794 - 32921903
Alignment:
| Q |
22 |
gctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttgagtttt |
121 |
Q |
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| T |
32921794 |
gctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgttgagtttt |
32921893 |
T |
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| Q |
122 |
ataataaggt |
131 |
Q |
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|||||||||| |
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| T |
32921894 |
ataataaggt |
32921903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 32932255 - 32932355
Alignment:
| Q |
20 |
acgctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttgagtt |
119 |
Q |
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|||||||| | ||||||||||||||||| |||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
32932255 |
acgctgtcatatttgatgctggtagcactggtactcgtgtccatgtttaccattttgaccagaacttagatcttcttcacattggcaatgatattgagtt |
32932354 |
T |
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| Q |
120 |
t |
120 |
Q |
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| |
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| T |
32932355 |
t |
32932355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 32897465 - 32897550
Alignment:
| Q |
31 |
tttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttga |
116 |
Q |
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||||||||||||||| | ||||||||||||||||| | |||||||||||||| ||||||||| ||||||||||||| ||| |||| |
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| T |
32897465 |
tttgatgctggtagctctggtagccgtgttcatgtttttcattttgatcagaatttagatcttgttcacattggcaaagatcttga |
32897550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 11822312 - 11822423
Alignment:
| Q |
20 |
acgctgtcgtctttgatgctggtagcaccggtagccgtgttcatgtctaccattttgatcagaacttagatcttcttcacattggcaacgatgttgagtt |
119 |
Q |
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||||||| || ||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||| |||||||||| |||| || ||||||||||| |
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| T |
11822312 |
acgctgttgtgtttgatgctggtagcactggaagccgtgtccatgtttaccattttgatcaaaacttaaatcttcttcatgttggtaaagatgttgagtt |
11822411 |
T |
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| Q |
120 |
ttataataaggt |
131 |
Q |
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|||||||||||| |
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| T |
11822412 |
ttataataaggt |
11822423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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