View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19927_low_93 (Length: 293)

Name: NF19927_low_93
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19927_low_93
NF19927_low_93
[»] chr7 (8 HSPs)
chr7 (18-283)||(10486460-10486725)
chr7 (47-163)||(8178028-8178144)
chr7 (114-209)||(4097785-4097880)
chr7 (48-179)||(38176242-38176373)
chr7 (118-163)||(42415262-42415307)
chr7 (125-163)||(8881888-8881926)
chr7 (118-163)||(38195637-38195682)
chr7 (126-162)||(5460933-5460969)
[»] chr4 (3 HSPs)
chr4 (18-283)||(29542086-29542345)
chr4 (115-166)||(50648799-50648850)
chr4 (119-163)||(47813890-47813934)
[»] chr1 (7 HSPs)
chr1 (18-283)||(19023245-19023503)
chr1 (47-163)||(4816708-4816824)
chr1 (48-163)||(5299435-5299550)
chr1 (121-162)||(37872103-37872144)
chr1 (130-163)||(46342965-46342998)
chr1 (114-162)||(36526295-36526343)
chr1 (114-162)||(37923633-37923681)
[»] chr8 (8 HSPs)
chr8 (48-162)||(2703962-2704076)
chr8 (118-163)||(15074416-15074461)
chr8 (118-163)||(11743954-11743999)
chr8 (48-142)||(22642808-22642902)
chr8 (130-163)||(8618401-8618434)
chr8 (120-163)||(31385850-31385894)
chr8 (229-269)||(31385958-31385998)
chr8 (125-161)||(34986379-34986414)
[»] chr5 (9 HSPs)
chr5 (47-179)||(43391051-43391182)
chr5 (121-279)||(9178870-9179028)
chr5 (65-163)||(32912854-32912952)
chr5 (47-163)||(22497644-22497760)
chr5 (115-158)||(33589298-33589341)
chr5 (115-163)||(12186853-12186901)
chr5 (126-162)||(26917409-26917445)
chr5 (115-158)||(4428968-4429011)
chr5 (121-163)||(41787928-41787970)
[»] chr2 (8 HSPs)
chr2 (48-179)||(4318722-4318853)
chr2 (108-158)||(34120919-34120969)
chr2 (47-104)||(7119879-7119936)
chr2 (130-163)||(28626438-28626471)
chr2 (115-163)||(31015512-31015560)
chr2 (130-179)||(6409577-6409626)
chr2 (130-163)||(34212767-34212800)
chr2 (118-166)||(11070854-11070902)
[»] chr3 (4 HSPs)
chr3 (48-179)||(1527248-1527379)
chr3 (48-163)||(25500951-25501066)
chr3 (123-178)||(3630092-3630147)
chr3 (118-163)||(53920290-53920335)
[»] scaffold0094 (1 HSPs)
scaffold0094 (118-163)||(15223-15268)
[»] chr6 (2 HSPs)
chr6 (48-163)||(1100973-1101088)
chr6 (115-163)||(6508096-6508144)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 10486460 - 10486725
Alignment:
Q  18 attatttcattcaataaaatggagttaattaatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||| |    
T  10486460 attatttcattcaataaaatggagttaattaatacaagatggaatcgaatcaaaaacatggtgacaagtgtacaattttgactctctacctaagccgtag 10486559  T
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaattttttgtaatagaggcctacacatatcaataatattgccaaactcagatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  10486560 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaatagaggcctacacatatgaataatattgtcaaactcggatt 10486659  T
Q  218 gactattagttctatcaaggatgttgtcaaccactagcttgcagtctagttcaatttacacctttg 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10486660 gactattagttctatcaaggatgttgtcaaccactagcttgcagtctagttcaatttacacctttg 10486725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 8178028 - 8178144
Alignment:
Q  47 taatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaa 146  Q
    ||||||||||||||||| |||||||||| ||| ||| ||| ||||||||||||||||||  |||    ||||| ||| ||||||||||||||||| ||||    
T  8178028 taatacaagatggaatccaatcaaaaacgtggcgactagcatacaattttgactccctagctaatgtatgggcaacaaaatttgcttgtctcctagcaaa 8178127  T
Q  147 acttatcttaaagtttg 163  Q
    |||||||||||||||||    
T  8178128 acttatcttaaagtttg 8178144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 4097880 - 4097785
Alignment:
Q  114 gtgggcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaattttttgtaatagaggcctacacatatcaataatattgccaaa 209  Q
    ||||||||||||||||||| ||||| | | ||||||||||||||||||||  | || ||||||||| ||||||||  ||   ||||||||||||||    
T  4097880 gtgggcgacataatttgctagtctcgtgataaaacttatcttaaagtttgggaattgttgtaatagtggcctacaattagacataatattgccaaa 4097785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 38176242 - 38176373
Alignment:
Q  48 aatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaaa 147  Q
    |||||||||||||||| ||||||| || ||||||| ||| |  ||| ||||| |||||   ||    || ||||||  ||| ||||||||||||||||||    
T  38176242 aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa 38176341  T
Q  148 cttatcttaaagtttgaaattttttgtaatag 179  Q
    |||||||||||||||| || || |||||||||    
T  38176342 cttatcttaaagtttgtaaattgttgtaatag 38176373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 42415307 - 42415262
Alignment:
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||||| |||| |||||||||||||||||||||||| |||||||||    
T  42415307 gcgacaaaattagcttgtctcctaacaaaacttatcctaaagtttg 42415262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 8881926 - 8881888
Alignment:
Q  125 aatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  8881926 aatttgcttgtctcataacaaaatttatcttaaagtttg 8881888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 38195637 - 38195682
Alignment:
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    ||||||||||||||||||||||  |  |||||||||||||||||||    
T  38195637 gcgacataatttgcttgtctccagatgaaacttatcttaaagtttg 38195682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 5460969 - 5460933
Alignment:
Q  126 atttgcttgtctcctaacaaaacttatcttaaagttt 162  Q
    |||||||||||||||||  ||||||||||||||||||    
T  5460969 atttgcttgtctcctaatgaaacttatcttaaagttt 5460933  T

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Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 29542345 - 29542086
Alignment:
Q  18 attatttcattcaataaaatggagttaattaatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgg 117  Q
    |||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||| | |||    
T  29542345 attatttcattcaataaaatagagttaat----acaagatggaatcgaatcaaaaacatggtgacgagcgtacaattttgactccctagctaagccatgg 29542250  T
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaattttttgtaatagaggcctacacatatcaataatattgccaaactcagatt 217  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| || ||||||||||| ||||||| | | ||||||| ||||||||||  |||    
T  29542249 gcgacataatttgcttgtatcctaacaaaatttatcttaaagtttgaaaattgttgtaatagagacctacacctgttaataatagtgccaaactc--att 29542152  T
Q  218 gactattagttctatcaaggatgttgtcaaccactagcttgcagtctagttcaatttacacctttg 283  Q
    ||||||||||||||||||| ||| | |||||||||||||| | |||||||||||||| ||||||||    
T  29542151 gactattagttctatcaagtatgctttcaaccactagcttacggtctagttcaatttgcacctttg 29542086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 50648850 - 50648799
Alignment:
Q  115 tgggcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaa 166  Q
    |||| ||||||||||| |||||||   |||||||||||||||||||||||||    
T  50648850 tgggagacataatttgtttgtctctatacaaaacttatcttaaagtttgaaa 50648799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 47813890 - 47813934
Alignment:
Q  119 cgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||||||||||||||||||||  |  |||||||||||||||||||    
T  47813890 cgacataatttgcttgtctccggatgaaacttatcttaaagtttg 47813934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 19023245 - 19023503
Alignment:
Q  18 attatttcattcaataaaatggagttaattaatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgg 117  Q
    |||||||||||||||||||| ||||||||    |||| ||| ||||||||||||      ||||| || |||||||||||||||||||  ||||   ||     
T  19023245 attatttcattcaataaaatagagttaat----acaaaatgaaatcgaatcaaagga---gtgacgagtgtacaattttgactccctagctaagctatga 19023337  T
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaattttttgtaatagaggcctacacatatcaataatattgccaaactcagatt 217  Q
    | || |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| | ||||||| |||||||||||||||    
T  19023338 gtgatataatttgtttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaatagagacctacacatgttaataatagtgccaaactcagatt 19023437  T
Q  218 gactattagttctatcaaggatgttgtcaaccactagcttgcagtctagttcaatttacacctttg 283  Q
    ||||||||||||||||||| ||| | |||||||||||||  |||||||||||||||| ||||||||    
T  19023438 gactattagttctatcaagtatgctttcaaccactagctcacagtctagttcaatttgcacctttg 19023503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 4816824 - 4816708
Alignment:
Q  47 taatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaa 146  Q
    ||||| |||||| |||| ||||||| || ||||||| ||| |||||||||||||||||   ||||   |||||||||||||||||||||||||| ||| |    
T  4816824 taatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataatttgcttgtctccttacata 4816725  T
Q  147 acttatcttaaagtttg 163  Q
    | |||||||||||||||    
T  4816724 atttatcttaaagtttg 4816708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 5299550 - 5299435
Alignment:
Q  48 aatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaaa 147  Q
    |||||||||||||||| |||  ||||| ||||||| |||  ||||||||| ||||||   ||||   ||||||||  |||| |||||||| |||||||||    
T  5299550 aatacaagatggaatcaaattgaaaacgtggtgacgagcacacaattttgcctcccttgctaagcaatgggcgaccgaattcgcttgtcttctaacaaaa 5299451  T
Q  148 cttatcttaaagtttg 163  Q
     |||||||||||||||    
T  5299450 tttatcttaaagtttg 5299435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 37872144 - 37872103
Alignment:
Q  121 acataatttgcttgtctcctaacaaaacttatcttaaagttt 162  Q
    |||| ||||| ||||||||||| |||||||||||||||||||    
T  37872144 acattatttgtttgtctcctaataaaacttatcttaaagttt 37872103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 46342998 - 46342965
Alignment:
Q  130 gcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    ||||||||||||||||||||||||||| ||||||    
T  46342998 gcttgtctcctaacaaaacttatcttagagtttg 46342965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 36526295 - 36526343
Alignment:
Q  114 gtgggcgacataatttgcttgtctcctaacaaaacttatcttaaagttt 162  Q
    |||||| |||| ||||| |||||||||||  ||||||||||||||||||    
T  36526295 gtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttt 36526343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 37923633 - 37923681
Alignment:
Q  114 gtgggcgacataatttgcttgtctcctaacaaaacttatcttaaagttt 162  Q
    |||||| |||| ||||| |||||||||||  ||||||||||||||||||    
T  37923633 gtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttt 37923681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 2703962 - 2704076
Alignment:
Q  48 aatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaaa 147  Q
    |||| ||||||||||| ||||| | | |||||||||||||| ||| ||| || | ||  ||||    || ||||||||||||||||||||||||||||||    
T  2703962 aatataagatggaatcaaatcatagatatggtgacaagcgtccaactttaacgctcttgttaaagtatgagcgacataatttgcttgtctcctaacaaaa 2704061  T
Q  148 cttatcttaaagttt 162  Q
    |||||||||||||||    
T  2704062 cttatcttaaagttt 2704076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 15074416 - 15074461
Alignment:
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||    
T  15074416 gcgacacaatttgcttgtcttctaacaaaacttatcttaaagtttg 15074461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 11743999 - 11743954
Alignment:
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||||    
T  11743999 gcgacataatttgtttgtctccttacaaaatttatcttaaagtttg 11743954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 22642808 - 22642902
Alignment:
Q  48 aatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaa 142  Q
    ||||||||||| |||| ||||||| || ||||||| ||| ||||| || ||||||||   ||||   |||||||||||||||| |||| ||||||    
T  22642808 aatacaagatgaaatcaaatcaaatacttggtgactagcatacaaattcgactccctcgctaagcgatgggcgacataatttgtttgtatcctaa 22642902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 8618401 - 8618434
Alignment:
Q  130 gcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||||||||||||||||||||||||| |||||||    
T  8618401 gcttgtctcctaacaaaacttatcttgaagtttg 8618434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 31385850 - 31385894
Alignment:
Q  120 gacataatttgcttgtctcctaacaaaactt-atcttaaagtttg 163  Q
    |||| |||| ||||||||||||||||||||| |||||||||||||    
T  31385850 gacaaaattagcttgtctcctaacaaaacttaatcttaaagtttg 31385894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 31385958 - 31385998
Alignment:
Q  229 ctatcaaggatgttgtcaaccactagcttgcagtctagttc 269  Q
    |||||||| ||| | ||||||||||||||||||||||||||    
T  31385958 ctatcaagaatgctatcaaccactagcttgcagtctagttc 31385998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 34986379 - 34986414
Alignment:
Q  125 aatttgcttgtctcctaacaaaacttatcttaaagtt 161  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34986379 aatttgcttgtctcctaacaaaacttat-ttaaagtt 34986414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 43391051 - 43391182
Alignment:
Q  47 taatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactcccta-cttaagtcgtgggcgacataatttgcttgtctcctaacaa 145  Q
    |||||||| |||||||| ||||||||||||| |||| ||| |||| ||||||| ||||  || ||||  ||||||||||||||||||||||||| || ||    
T  43391051 taatacaa-atggaatcaaatcaaaaacatgatgactagcatacagttttgacacccttgctaaagta-tgggcgacataatttgcttgtctccgaataa 43391148  T
Q  146 aacttatcttaaagtttgaaattttttgtaatag 179  Q
    |||||||| |||||||| ||| || | |||||||    
T  43391149 aacttatcataaagtttaaaaattatagtaatag 43391182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 279
Target Start/End: Original strand, 9178870 - 9179028
Alignment:
Q  121 acataatttgcttgtctcctaacaaaacttatcttaaagtttgaaattttttgtaatagaggcctacacatatcaataatattgccaaactcagattgac 220  Q
    |||||||| ||||||||| ||||||||||||| ||||||||| ||| || |||||| || |  |||||  || | |  ||||||||||||||| |||||     
T  9178870 acataattcgcttgtctcttaacaaaacttattttaaagtttaaaaattattgtaaaagtgatctacaattaaccaacatattgccaaactcatattgat 9178969  T
Q  221 tattagttctatcaaggatgttgtcaaccactagcttgcagtctagttcaatttacacc 279  Q
    | |||||| |||| | |||||  || ||||| ||||| || ||||| ||||||||||||    
T  9178970 tgttagttgtatccatgatgtcttccaccaccagcttacaatctagctcaatttacacc 9179028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 32912952 - 32912854
Alignment:
Q  65 aatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    ||||||| ||||||| || ||| |||||||||||| ||||  ||||   ||| || ||| |||||||| ||| ||||||||||||||||||||||||||    
T  32912952 aatcaaatacatggtaactagcatacaattttgacgcccttgttaaagagtgagcaacaaaatttgctcgtcgcctaacaaaacttatcttaaagtttg 32912854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 22497644 - 22497760
Alignment:
Q  47 taatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaa 146  Q
    |||||||||| |||||| ||||||| ||| |||||| ||| |  ||| ||||| ||||   |||||  || | ||||  ||| |||||||||||||||||    
T  22497644 taatacaagaaggaatcaaatcaaagacacggtgacgagcatgtaatattgacacccttgctaagttatgagtgacaacattcgcttgtctcctaacaaa 22497743  T
Q  147 acttatcttaaagtttg 163  Q
    |||||||||||||||||    
T  22497744 acttatcttaaagtttg 22497760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 33589298 - 33589341
Alignment:
Q  115 tgggcgacataatttgcttgtctcctaacaaaacttatcttaaa 158  Q
    |||| |||||||||||||||||||||||||||||||| ||||||    
T  33589298 tgggggacataatttgcttgtctcctaacaaaacttaacttaaa 33589341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 12186901 - 12186853
Alignment:
Q  115 tgggcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    ||||||||  |||| ||||| ||||||||||||||||||||||||||||    
T  12186901 tgggcgacggaattcgcttgcctcctaacaaaacttatcttaaagtttg 12186853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 26917445 - 26917409
Alignment:
Q  126 atttgcttgtctcctaacaaaacttatcttaaagttt 162  Q
    ||||||||||||||||| |||||||||||||||||||    
T  26917445 atttgcttgtctcctaataaaacttatcttaaagttt 26917409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 4429011 - 4428968
Alignment:
Q  115 tgggcgacataatttgcttgtctcctaacaaaacttatcttaaa 158  Q
    |||| |||| |||||||||| |||||||||||||||||||||||    
T  4429011 tgggtgacagaatttgcttgcctcctaacaaaacttatcttaaa 4428968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 41787928 - 41787970
Alignment:
Q  121 acataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||||||| |||||||||||||||||| |||||| ||||||||    
T  41787928 acataattagcttgtctcctaacaaaatttatctcaaagtttg 41787970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 4318722 - 4318853
Alignment:
Q  48 aatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaaa 147  Q
    |||||||||||||||| ||||||| || ||||||| ||| |  ||| ||||| |||||   ||    || ||||||  |||| |||||||||||||||||    
T  4318722 aatacaagatggaatcaaatcaaagacttggtgacgagcttgtaatattgacaccctagcgaaactatgagcgacaacatttacttgtctcctaacaaaa 4318821  T
Q  148 cttatcttaaagtttgaaattttttgtaatag 179  Q
    |||||||||||||||| || ||||||||||||    
T  4318822 cttatcttaaagtttgtaaatttttgtaatag 4318853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 34120919 - 34120969
Alignment:
Q  108 taagtcgtgggcgacataatttgcttgtctcctaacaaaacttatcttaaa 158  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||||||||    
T  34120919 taagtcatgggcgacataatttgtttgtctcctaacaaaatttatcttaaa 34120969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 7119879 - 7119936
Alignment:
Q  47 taatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccct 104  Q
    ||||||||||||||||| ||||||||| |||||||| | | |||||||||||||||||    
T  7119879 taatacaagatggaatcaaatcaaaaatatggtgactatcatacaattttgactccct 7119936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 28626438 - 28626471
Alignment:
Q  130 gcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    ||||||||||||||||||||||||||||||||||    
T  28626438 gcttgtctcctaacaaaacttatcttaaagtttg 28626471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 31015512 - 31015560
Alignment:
Q  115 tgggcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||| |||| |||||||||| |||||||||||| |||||||||||||||    
T  31015512 tgggtgacaaaatttgcttgcctcctaacaaaatttatcttaaagtttg 31015560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 6409626 - 6409577
Alignment:
Q  130 gcttgtctcctaacaaaacttatcttaaagtttgaaattttttgtaatag 179  Q
    |||| |||||||||||||||||||||||| |||| || || |||||||||    
T  6409626 gcttctctcctaacaaaacttatcttaaaatttgtaaattgttgtaatag 6409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 34212800 - 34212767
Alignment:
Q  130 gcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||||||||||||||||| |||||||||||||||    
T  34212800 gcttgtctcctaacaaaatttatcttaaagtttg 34212767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 11070902 - 11070854
Alignment:
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaa 166  Q
    ||||||||| ||||||| ||||||  |||||||||||||| ||||||||    
T  11070902 gcgacataaattgcttgactcctagtaaaacttatcttaatgtttgaaa 11070854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 1527379 - 1527248
Alignment:
Q  48 aatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaaa 147  Q
    |||||||||||||||| ||||||| || ||||||| ||| |  ||| ||||| |||||   ||    || ||||||  ||| ||||||||||||||||||    
T  1527379 aatacaagatggaatcaaatcaaagacttggtgacgagcttgaaatattgacaccctagcgaaactatgagcgacaacattcgcttgtctcctaacaaaa 1527280  T
Q  148 cttatcttaaagtttgaaattttttgtaatag 179  Q
    |||||||||||||||| || || |||||||||    
T  1527279 cttatcttaaagtttgtaaattgttgtaatag 1527248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 25501066 - 25500951
Alignment:
Q  48 aatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccctacttaagtcgtgggcgacataatttgcttgtctcctaacaaaa 147  Q
    |||||||||||||||| ||| ||| ||  |||||| ||| |||||||||||  ||||   |||    ||||||||| |||||||||||||||| ||| ||    
T  25501066 aatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaactatgggcgacacaatttgcttgtctccttacataa 25500967  T
Q  148 cttatcttaaagtttg 163  Q
     |||||||||||||||    
T  25500966 tttatcttaaagtttg 25500951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 3630147 - 3630092
Alignment:
Q  123 ataatttgcttgtctcctaacaaaacttatcttaaagtttgaaattttttgtaata 178  Q
    |||||| ||||||||| ||||||| ||||||||||| ||||||| || ||||||||    
T  3630147 ataattcgcttgtctcataacaaagcttatcttaaaatttgaaaattattgtaata 3630092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 53920335 - 53920290
Alignment:
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||||| |||| |||||||| ||||||||||| |||||||||||||    
T  53920335 gcgacaaaattagcttgtcttctaacaaaactcatcttaaagtttg 53920290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 15268 - 15223
Alignment:
Q  118 gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||    
T  15268 gcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttg 15223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 1100973 - 1101088
Alignment:
Q  48 aatacaagatggaatcgaatcaaaaacatggtgacaagcgtacaattttgactccc-tacttaagtcgtgggcgacataatttgcttgtctcctaacaaa 146  Q
    |||||||||||||||| |||||||    ||||||| ||| |  ||| ||||||||| |||| ||||  || |||||| |||||| |||||||||| ||||    
T  1100973 aatacaagatggaatcaaatcaaactgttggtgacgagcatgtaatcttgactcccctactaaagta-tgagcgacaaaatttgattgtctcctagcaaa 1101071  T
Q  147 acttatcttaaagtttg 163  Q
    |||| ||||||||||||    
T  1101072 acttttcttaaagtttg 1101088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 6508096 - 6508144
Alignment:
Q  115 tgggcgacataatttgcttgtctcctaacaaaacttatcttaaagtttg 163  Q
    ||||||||| |||||||||||||| |||||||| || ||||||| ||||    
T  6508096 tgggcgacacaatttgcttgtctcataacaaaaattttcttaaaatttg 6508144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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