View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19927_low_99 (Length: 286)
Name: NF19927_low_99
Description: NF19927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19927_low_99 |
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| [»] scaffold0054 (4 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 38123 - 37864
Alignment:
| Q |
11 |
cagagaggggcgaatcgggaataataaacaaatagtgtatgggggagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattg |
110 |
Q |
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| T |
38123 |
cagagaggggcgaatcgggaataataaacaaatagtgtatggggcagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattg |
38024 |
T |
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| Q |
111 |
ggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctact |
210 |
Q |
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| T |
38023 |
ggagatcgaaaatatatccgaaaagtaaaatagaaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctact |
37924 |
T |
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| Q |
211 |
ctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaacaaatgcaatggtgagtt |
270 |
Q |
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| T |
37923 |
ctcttcgtcttgtgttgatgaagaagaaaccactccctgcaacaaatgcaatggtgagtt |
37864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 55 - 266
Target Start/End: Complemental strand, 41023 - 40812
Alignment:
| Q |
55 |
gagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagatt |
154 |
Q |
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| T |
41023 |
gagaagaaattctcatatattttttgaagagacaaaaaaacttgtgttaactattaggagattgaaaacatttacaaaaattaaaaaagaaaaggagatt |
40924 |
T |
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| Q |
155 |
gagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaaca |
254 |
Q |
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| T |
40923 |
gagaaggttagaggttacttagggttaggattgcaatttgcaagcaaagttcgattctcttcgtgtcgtgtcgatggagaacaaatcaacggctgcaaca |
40824 |
T |
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| Q |
255 |
aatgcaatggtg |
266 |
Q |
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| T |
40823 |
aatgcaaaggtg |
40812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 49671 - 49523
Alignment:
| Q |
72 |
tatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggtta |
171 |
Q |
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| T |
49671 |
tatttttttaagagaaaacaaaacatatgttaactattgggagatcgaaaatatttccaaaaggtaaaatagaaaaggagattgagaaggtcattggtta |
49572 |
T |
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| Q |
172 |
cttagggttaggattgcaatttgcaagcaaagttctactctcttcgtct |
220 |
Q |
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| T |
49571 |
cttagggttcagattgcaatatacaagcaaagttcgactctcttcgtct |
49523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 34572 - 34455
Alignment:
| Q |
149 |
gagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcct |
248 |
Q |
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| T |
34572 |
gagattgagaaggtcagtggttactttgggttaggattgaaatttgcaagcaaagttcgattctcttcatctcgtgtcgatgaagaagaaatcagcggct |
34473 |
T |
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| Q |
249 |
gcaacaaatgcaatggtg |
266 |
Q |
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| T |
34472 |
gcaacaaatgcaaaggtg |
34455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 13338974 - 13339124
Alignment:
| Q |
111 |
ggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctact |
210 |
Q |
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|||||| |||||||| ||| || | ||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| | | ||| |
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| T |
13338974 |
ggagattgaaaatatttccaaacattaaaaaagaaaaggagattgagaaggttagtggttacttagggttagaattgcaatttgcaagtaaaatccgact |
13339073 |
T |
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| Q |
211 |
ctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaacaaatgcaa |
261 |
Q |
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| T |
13339074 |
ctcttcgtctcgtgtcgatggagaagaaatcagaggctgcaacaattgcaa |
13339124 |
T |
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