View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19928_high_1 (Length: 944)

Name: NF19928_high_1
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19928_high_1
NF19928_high_1
[»] chr5 (8 HSPs)
chr5 (1-394)||(16052724-16053116)
chr5 (748-939)||(19598759-19598947)
chr5 (425-535)||(16052533-16052643)
chr5 (596-749)||(16052321-16052471)
chr5 (79-239)||(15936203-15936363)
chr5 (291-369)||(15936391-15936469)
chr5 (767-870)||(13951464-13951564)
chr5 (703-742)||(42564264-42564303)
[»] chr3 (7 HSPs)
chr3 (748-939)||(53534854-53535042)
chr3 (82-219)||(36309075-36309212)
chr3 (48-143)||(36313269-36313364)
chr3 (748-780)||(53533654-53533686)
chr3 (174-220)||(36327440-36327486)
chr3 (30-143)||(36333336-36333449)
chr3 (174-219)||(36335970-36336015)
[»] chr1 (3 HSPs)
chr1 (748-931)||(4753423-4753603)
chr1 (775-939)||(38202442-38202604)
chr1 (748-780)||(4756677-4756709)
[»] chr8 (1 HSPs)
chr8 (748-931)||(42915883-42916063)
[»] chr7 (3 HSPs)
chr7 (751-931)||(23252770-23252947)
chr7 (748-939)||(21944680-21944868)
chr7 (748-780)||(23255547-23255579)
[»] chr4 (3 HSPs)
chr4 (752-939)||(13096248-13096431)
chr4 (748-939)||(17382381-17382568)
chr4 (743-804)||(25063602-25063663)
[»] chr2 (1 HSPs)
chr2 (825-939)||(41543723-41543835)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 16053116 - 16052724
Alignment:
Q  1 aagccttctgatgatttggccttagttactgctgatacgatgactaatctacgccatcttgatatcaagggagacagcctcactaatgttggtttgcttg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||| |    
T  16053116 aagccttctgatgatttggccttagttattgctgatacgatgactaatctatgctatcttgatatcaagggagacaacctcactaatgatggtttgctcg 16053017  T
Q  101 ccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttgaagaaaaggtgcactgagcagat 200  Q
    ||||||||||||| |||||||||||| ||||||||||| ||| | |||||  || | | |||||||||| ||||||| |||||||||||| ||| | |||    
T  16053016 ccattcttgataaatgcccttttcttgaatctcttgaccttcaaggatgtcgttatctagaattaagtaaaagtttggagaaaaggtgcattgatccgat 16052917  T
Q  201 caatcatttgcaactgccaaattcttatgactttgatgactatgattactcccctagttatgaatatgactttggcggagactatgatccttggtactac 300  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||   || |||||||||||||||||||||||||||| |||||||||||    
T  16052916 caatcatttgcgactgccaaatttttatgtctttgatgactatgattactcccc---ttgtgaatatgactttggcggagactatgattcttggtactac 16052820  T
Q  301 tgaatgttgtagtattggtg--atgatgaaaaataaggtttttatattatacggtggatttcttgtcatgtactccctctgatctcgaatgtaagc 394  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||    
T  16052819 tgaatgttgtagtattggtgatatgatgaaaaataaggtttttatattatacggtggatttcttgtcatgtactccctccggtctcaaatgtaagc 16052724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 748 - 939
Target Start/End: Original strand, 19598759 - 19598947
Alignment:
Q  748 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 847  Q
    |||||||||||||||| | | || | ||||||| || || |||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  19598759 tactccctccgtcccaaattatatgccgctttggcacttctacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 19598855  T
Q  848 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 939  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||  ||||| ||||||| ||||||||||||||||||||||| |||||    
T  19598856 ttcctcttttacccttggcaacacaattactccaacttgattgccaccgtcccaaattcctcaaactccaaggcaatgaattcacacggttc 19598947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 425 - 535
Target Start/End: Complemental strand, 16052643 - 16052533
Alignment:
Q  425 atgaagtatttatcgtgatccttgatgatactcatgctactgatgttttaaaggattttgttgaaggcaacctaattggcatgctttgttaaacaattgg 524  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16052643 atgaagtatttattgtgatccttgatgatactcatgctaatgatgttttaaaggattttgttgaaggcaacctaattggcatgctttgttaaacaattgg 16052544  T
Q  525 ttaggactatc 535  Q
    |||||||||||    
T  16052543 ttaggactatc 16052533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 596 - 749
Target Start/End: Complemental strand, 16052471 - 16052321
Alignment:
Q  596 aatgaaagtctatgtgtgatttctccttggtcgtatagaaaaacgcatnnnnnnntgagataagaattaattagagtaaagtttgtagtagtatttcctt 695  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||       || |||||||||||||||||||||| |||||||||   |||||||    
T  16052471 aatgaaagtctatgtgtgatttcaccttggtcgtataggaaaacgcataaaaaaatgtgataagaattaattagagtaaaatttgtagta---tttcctt 16052375  T
Q  696 tttgcctcaattatgcagtaatcacccacttattgcttgtattagcttatacta 749  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16052374 tttgcctcaattatgcagtaatcaaccacttattgcttgtattagcttatacta 16052321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 79 - 239
Target Start/End: Original strand, 15936203 - 15936363
Alignment:
Q  79 ctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttga 178  Q
    |||||||||| ||||||||| |||||||||||||| || ||||||||| ||||||||||| ||| | |||||  || | | ||||| |||  |||||||     
T  15936203 ctcactaatgatggtttgctcgccattcttgataaatggccttttcttgaatctcttgaccttcaaggatgtcgttatctcgaattgagtgaaagtttgg 15936302  T
Q  179 agaaaaggtgcactgagcagatcaatcatttgcaactgccaaattcttatgactttgatga 239  Q
    | |||||||||| ||| |  |||||||||||||||||||||| |  |||||||| ||||||    
T  15936303 aaaaaaggtgcattgatcgaatcaatcatttgcaactgccaattcgttatgactctgatga 15936363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 15936391 - 15936469
Alignment:
Q  291 ttggtactactgaatgttgtagtattggtgatgatgaaaaataaggtttttatattatacggtggatttcttgtcatgt 369  Q
    ||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  15936391 ttggtactagtgaatgttgtagtcttagtgatgatgaaaaataaagtttttatattatactgtgaatttcttgtcatgt 15936469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 767 - 870
Target Start/End: Original strand, 13951464 - 13951564
Alignment:
Q  767 tgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcctcttttacctttggc 866  Q
    |||| |||||||||||| ||||||| ||||||||||||    | |||||||||| |||||||| |||| ||||||| | ||| ||||||||||| ||| |    
T  13951464 tgtatgtcgctttgacacttttacgtatattaagaaatc---tctaacttttgtaaactttgtcaaaagtaaatatatttttccctcttttacccttgac 13951560  T
Q  867 aaca 870  Q
    ||||    
T  13951561 aaca 13951564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 742
Target Start/End: Complemental strand, 42564303 - 42564264
Alignment:
Q  703 caattatgcagtaatcacccacttattgcttgtattagct 742  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  42564303 caattatgcagtaatcaccaatttattgcttgtattagct 42564264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 6e-86; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 748 - 939
Target Start/End: Complemental strand, 53535042 - 53534854
Alignment:
Q  748 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 847  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  53535042 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 53534946  T
Q  848 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 939  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  53534945 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattcatatggttc 53534854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 36309212 - 36309075
Alignment:
Q  82 actaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcgacgatgttattctttggaattaagtataagtttgaaga 181  Q
    |||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||||||| |||||  ||| | | ||||| |||  |||||||||||    
T  36309212 actaatgttggtttgcatgccattcttgttaagtgccctctgcttaaatctcttgacattcgtcgatgacattatcttgaattgagtgaaagtttgaaga 36309113  T
Q  182 aaaggtgcactgagcagatcaatcatttgcaactgcca 219  Q
    ||||||||| ||| ||||||||| ||||||||||||||    
T  36309112 aaaggtgcattgatcagatcaatgatttgcaactgcca 36309075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 36313364 - 36313269
Alignment:
Q  48 tctacgccatcttgatatcaagggagacagcctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaatctcttgacattcg 143  Q
    |||||||||||||||||| || ||| |||  |||||| |  ||||| |||| |||||| ||||||| |||||| ||||| | ||||||||||||||    
T  36313364 tctacgccatcttgatatgaaaggacacaagctcactgaacttggtgtgctcgccattattgataaatgccctcttcttgagtctcttgacattcg 36313269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 780
Target Start/End: Complemental strand, 53533686 - 53533654
Alignment:
Q  748 tactccctccgtcccacaatgtaagtcgctttg 780  Q
    |||||||||||||||||||||||||||||||||    
T  53533686 tactccctccgtcccacaatgtaagtcgctttg 53533654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 36327486 - 36327440
Alignment:
Q  174 tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgccaa 220  Q
    ||||||||||||||||| ||| ||||||||  |||||||||||||||    
T  36327486 tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgccaa 36327440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 36333449 - 36333336
Alignment:
Q  30 tgctgatacgatgactaatctacgccatcttgatatcaagggagacagcctcactaatgttggtttgcttgccattcttgataagtgcccttttcttaaa 129  Q
    |||||| |||||| ||  |||| ||||||||||||| || ||| |||  |||||| |  ||||| |||| |||||| |||||||  ||||| ||||| |     
T  36333449 tgctgaaacgatgcctggtctatgccatcttgatatgaaaggacacaagctcactcaacttggtgtgctcgccattattgataaaggccctcttcttgag 36333350  T
Q  130 tctcttgacattcg 143  Q
    ||||||||||||||    
T  36333349 tctcttgacattcg 36333336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 36336015 - 36335970
Alignment:
Q  174 tttgaagaaaaggtgcactgagcagatcaatcatttgcaactgcca 219  Q
    ||||||||||||||||| ||| ||||||||  ||||||||||||||    
T  36336015 tttgaagaaaaggtgcattgaccagatcaaggatttgcaactgcca 36335970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 3e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 748 - 931
Target Start/End: Original strand, 4753423 - 4753603
Alignment:
Q  748 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 847  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  4753423 tactccctccgtcccacaatgtaagtcgctttgacacttttacgtatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 4753519  T
Q  848 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 931  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4753520 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattca 4753603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 775 - 939
Target Start/End: Complemental strand, 38202604 - 38202442
Alignment:
Q  775 gctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtttt-cctcttttacctttggcaacacaa 873  Q
    ||||||||| |||||| ||||||||||||||   ||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  38202604 gctttgacacttttacacatattaagaaata---tttaacttttgtgaactttgttaaaattagatatgtttttttcctcttttacccttggcaacacaa 38202508  T
Q  874 ttactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 939  Q
    |||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  38202507 ttactccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 38202442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 780
Target Start/End: Complemental strand, 4756709 - 4756677
Alignment:
Q  748 tactccctccgtcccacaatgtaagtcgctttg 780  Q
    |||||||||||||||||||||||||||||||||    
T  4756709 tactccctccgtcccacaatgtaagtcgctttg 4756677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 8e-79; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 748 - 931
Target Start/End: Original strand, 42915883 - 42916063
Alignment:
Q  748 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 847  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  42915883 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgtt 42915979  T
Q  848 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 931  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  42915980 ttcctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattca 42916063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 5e-77; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 751 - 931
Target Start/End: Original strand, 23252770 - 23252947
Alignment:
Q  751 tccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttc 850  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||    
T  23252770 tccctccgtcccacaatgtaagtcgctttgacattttttcgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgttttc 23252866  T
Q  851 ctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattca 931  Q
    |||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  23252867 ctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattca 23252947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 748 - 939
Target Start/End: Original strand, 21944680 - 21944868
Alignment:
Q  748 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 847  Q
    |||||| ||||| ||| | |||| || |||||| || ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  21944680 tactccttccgttccaaattgtacgttgctttggcacttttacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 21944776  T
Q  848 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 939  Q
    ||||||||||| | |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  21944777 ttcctcttttatccttggcaacacaattactccaacttgattgtcaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 21944868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 780
Target Start/End: Complemental strand, 23255579 - 23255547
Alignment:
Q  748 tactccctccgtcccacaatgtaagtcgctttg 780  Q
    |||||||||||||||||||||||||||||||||    
T  23255579 tactccctccgtcccacaatgtaagtcgctttg 23255547  T

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Target: chr4 (Bit Score: 106; Significance: 2e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 752 - 939
Target Start/End: Complemental strand, 13096431 - 13096248
Alignment:
Q  752 ccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcc 851  Q
    |||||||||||| | |||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||    
T  13096431 ccctccgtcccaaattgtatgtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgttttttcc 13096335  T
Q  852 tcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 939  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||  | ||| ||||||||||||| |||| | |||||||||| |||||    
T  13096334 tcttttacccttggcaacacaattaccccaacttgattgccaccgt-ccaaattcctccaactctaaggaattgaattcacacggttc 13096248  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 748 - 939
Target Start/End: Complemental strand, 17382568 - 17382381
Alignment:
Q  748 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 847  Q
    |||||||||||| ||| | |||| ||||||||| || |||||| |||||||||||||    ||||||||||||||||||||||||||||| |||||| ||    
T  17382568 tactccctccgttccaaattgtacgtcgctttggcacttttacacatattaagaaatc---tttaacttttgtgaactttgttaaaattagatatgt-tt 17382473  T
Q  848 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 939  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  17382472 ttcctcttttacccttggcaacacaattattccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 17382381  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 804
Target Start/End: Original strand, 25063602 - 25063663
Alignment:
Q  743 tatactactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaat 804  Q
    ||||||||||||||||||||| | |||||| || |||| || ||| || |||||||||||||    
T  25063602 tatactactccctccgtcccaaattgtaagacgttttggcaatttcacacatattaagaaat 25063663  T

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Target: chr2 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 825 - 939
Target Start/End: Original strand, 41543723 - 41543835
Alignment:
Q  825 tttgttaaaattaaatatgtgttttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaat 924  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||    
T  41543723 tttgtgaaaattaaatatgt-ttttcctcttttacccttggcaacacaattactccaacttgattg-caccgtcccaaattcctccaactccaaggcaat 41543820  T
Q  925 gaattcacatggttc 939  Q
    ||||||||| |||||    
T  41543821 gaattcacacggttc 41543835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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