View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19928_high_10 (Length: 348)

Name: NF19928_high_10
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19928_high_10
NF19928_high_10
[»] chr7 (2 HSPs)
chr7 (84-330)||(35646842-35647088)
chr7 (1-37)||(35646647-35646683)
[»] chr4 (3 HSPs)
chr4 (251-326)||(41070998-41071071)
chr4 (255-326)||(42697702-42697774)
chr4 (194-249)||(41070859-41070913)
[»] chr5 (1 HSPs)
chr5 (2-82)||(19534324-19534404)
[»] chr8 (1 HSPs)
chr8 (48-82)||(35704340-35704374)
[»] chr1 (1 HSPs)
chr1 (48-82)||(27293576-27293610)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 84 - 330
Target Start/End: Original strand, 35646842 - 35647088
Alignment:
Q  84 ataaaatagaaaatatcacgaaaagaaaacacnnnnnnngaacaaatttgcttttgggatactctttctctcctccatcgattttccttcaatccaattc 183  Q
    ||||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35646842 ataaaatagaaaatatcacgaaaagaaaatattttttttgaacaaatttgcttttgggatactctttctctcctccatcgattttccttcaatccaattc 35646941  T
Q  184 aaaatatctatttcaatttttgtaagcttcgttttctaccatgtatatttagaatcatataaacgtattaagttgaatctgtattttttgtttgcaaact 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35646942 aaaatatctatttcaatttttgtaagcttcgttttctaccatgtatatttagaatcatataaacgtattaagttgaatctgtattttttgtttgcaaact 35647041  T
Q  284 aagagaactaggaaggctggcatcgttggcaaatatggtatgtatga 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35647042 aagagaactaggaaggctggcatcgttggcaaatatggtatgtatga 35647088  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35646647 - 35646683
Alignment:
Q  1 atgaactgtattcataaactgaatcaaactggaccac 37  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  35646647 atgaactgtatacataaactgaatcaaattggaccac 35646683  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 41070998 - 41071071
Alignment:
Q  251 ttaagttgaatctgtattttttgtttgcaaactaagagaactaggaaggctggcatcgttggcaaatatggtatgt 326  Q
    ||||||||||| |||| ||||| |  ||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  41070998 ttaagttgaatatgtactttttct--gcagactaagagaactaagaaggctggcatcgttggcaaatatggtatgt 41071071  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 42697774 - 42697702
Alignment:
Q  255 gttgaatctgtatttt-ttgtttgcaaactaagagaactaggaaggctggcatcgttggcaaatatggtatgt 326  Q
    |||||||||||| ||| || |||||| ||||||||||| | |||||||||||||||||||||||| |||||||    
T  42697774 gttgaatctgtactttattttttgcagactaagagaacaaagaaggctggcatcgttggcaaatacggtatgt 42697702  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 41070859 - 41070913
Alignment:
Q  194 tttcaatttttgtaagcttcgttttctaccatgtatatttagaatcatataaacgt 249  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  41070859 tttcaattttt-taagcttcgttttctaccatgtatatttagaatcacagaaacgt 41070913  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 19534324 - 19534404
Alignment:
Q  2 tgaactgtattcataaactgaatcaaactggaccacnnnnnnncaaaaccatattaaatggtttatgaactgaaccacaaa 82  Q
    |||| ||||| ||||| ||||| |||||||||||||       |  |||||||||||||||||||||||||||||||||||    
T  19534324 tgaattgtatccataagctgaaccaaactggaccacaaaaaaactgaaccatattaaatggtttatgaactgaaccacaaa 19534404  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 35704340 - 35704374
Alignment:
Q  48 aaccatattaaatggtttatgaactgaaccacaaa 82  Q
    |||||||||||||||||||||||||||||||||||    
T  35704340 aaccatattaaatggtttatgaactgaaccacaaa 35704374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 27293576 - 27293610
Alignment:
Q  48 aaccatattaaatggtttatgaactgaaccacaaa 82  Q
    |||||||||||||| ||||||||||||||||||||    
T  27293576 aaccatattaaatgatttatgaactgaaccacaaa 27293610  T

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