View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19928_high_11 (Length: 341)
Name: NF19928_high_11
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19928_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 933979 - 934309
Alignment:
| Q |
1 |
tcatcttataaatagtatttgagtctaacataattccacaaaatcaattttataagataaaaattgcttccgattata------tgttcgaataatcttt |
94 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
933979 |
tcatcttataaatagtgtttgagtctaacataactccacaaaatcaattttataagataaaaattgcttccgattataaatacatgttcgaataatcttt |
934078 |
T |
|
| Q |
95 |
tatcctacgtatgactactctttaacatatacaatttttaattgtgatattttattccttaacatttcttcttgtacaatnnnnnnnn-tctacaagatg |
193 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
934079 |
tatcctacatatgactactctttaacatatacaatttttaattgtgatattttattccttaacatttcttcttgtacaataaaaaaaaatctacaagatg |
934178 |
T |
|
| Q |
194 |
atcacaaacacattgtttaaaaaactaagaaaaatcgctttcaccgtacattttccctctgcctctttttatatatctatctctttaatcttacggtttt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
934179 |
atcacaaacacattgtttaaaaaactaagaaaaatcgctttcaccgtacattttccctctgtctctttttatatatctatctc-ttaatcttacggtttt |
934277 |
T |
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| Q |
294 |
tgtacactctctgaatctctctgccaagtacc |
325 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
934278 |
tgtacactctctgaatctctctgccaagtacc |
934309 |
T |
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