View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19928_high_12 (Length: 323)
Name: NF19928_high_12
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19928_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 21182793 - 21183105
Alignment:
| Q |
1 |
ccaaaccactaatgttcttctcaagaccaagtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21182793 |
ccaaaccactaatgttcttctcaagaccaagtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttgac |
21182892 |
T |
|
| Q |
101 |
aacaccaccgttgccggtatcttggaatatgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctcc |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21182893 |
aacaccactgttgccggtatcttggaatatgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctcc |
21182992 |
T |
|
| Q |
201 |
ctgcacttaatgacacttcttttgcaacaaagttttccaagaaactccgtagccttgctagtgcccagtttcctgctaacgttccacagaaagttgataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||| |
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| T |
21182993 |
ctgcacttaatgacacttcttttgcaacaaagttttccaagaaactccgcagccttgccagtccccagtttccggctaacgttccacagaaagttgataa |
21183092 |
T |
|
| Q |
301 |
gcactttttcttc |
313 |
Q |
| |
|
|||||||||||| |
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|
| T |
21183093 |
acactttttcttc |
21183105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 21205267 - 21205579
Alignment:
| Q |
1 |
ccaaaccactaatgttcttctcaagaccaagtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttgac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| ||||||||| ||||| | |||| ||| |||||||| |
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| T |
21205267 |
ccaaaccactaatgttcttctcaataccaagtcacactatcccaatgcggcattcttaatgactgctagaccctatgccgctggccctggaccttttgac |
21205366 |
T |
|
| Q |
101 |
aacaccaccgttgccggtatcttggaatatgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctcc |
200 |
Q |
| |
|
||||| || || || | |||| | ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| || |||||||||| ||| | |
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| T |
21205367 |
aacacaacggtcgctgctatccttgaatatgaaatcccaccaaatactcatcattcagcttcttcactaaaaaagcatcctctattcaaacctattcttc |
21205466 |
T |
|
| Q |
201 |
ctgcacttaatgacacttcttttgcaacaaagttttccaagaaactccgtagccttgctagtgcccagtttcctgctaacgttccacagaaagttgataa |
300 |
Q |
| |
|
||||| ||||||| || || |||||||||||||| ||||| |||||||||||||| || ||||| |||||||| ||||| ||||| ||||| | ||||| |
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| T |
21205467 |
ctgcatttaatgatacatcctttgcaacaaagttctccaacaaactccgtagcctagcaagtgcacagtttccagctaatgttcccaagaaaatcgataa |
21205566 |
T |
|
| Q |
301 |
gcactttttcttc |
313 |
Q |
| |
|
|||||||||||| |
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|
| T |
21205567 |
acactttttcttc |
21205579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 2 - 313
Target Start/End: Original strand, 21853495 - 21853806
Alignment:
| Q |
2 |
caaaccactaatgttcttctcaagaccaagtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttgaca |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| || || ||||| | ||||||||| || |||||||||||||| ||||| || |||||||||| |
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|
| T |
21853495 |
caaaccactaatgttcttctcaaaaccaaacctcattacccaaatgctacattcttaatgttagcaagaccatatgctacaggccaaggcacttttgaca |
21853594 |
T |
|
| Q |
102 |
acaccaccgttgccggtatcttggaatatgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctccc |
201 |
Q |
| |
|
|| | || ||||| || ||| | ||||||||||| |||| |||||||| |||||| ||||||||| ||||| |||||||||| ||||||| ||| || |
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|
| T |
21853595 |
actcaacagttgctggaatcatagaatatgaaattccatttaatactcaccattcaaattcttcactcaaaaaacttccacttttgaaacctattctacc |
21853694 |
T |
|
| Q |
202 |
tgcacttaatgacacttcttttgcaacaaagttttccaagaaactccgtagccttgctagtgcccagtttcctgctaacgttccacagaaagttgataag |
301 |
Q |
| |
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| ||||||||||||||| ||||||||||| || | || ||||| | |||| | || | ||| |||||||| ||||| ||||| || |||||||||||| |
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| T |
21853695 |
tcaacttaatgacacttcatttgcaacaaatttcactaacaaacttcatagcttagcaaatgctcagtttccagctaatgttcctcaaaaagttgataag |
21853794 |
T |
|
| Q |
302 |
cactttttcttc |
313 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21853795 |
cactttttcttc |
21853806 |
T |
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