View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19928_high_14 (Length: 284)
Name: NF19928_high_14
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19928_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 41148145 - 41148411
Alignment:
| Q |
1 |
cactttgtatacaacagatataaattgtaataagcataaactcaatcataaaaaatgaaatttcatgacttataaataattaaagtaatactttacgtgc |
100 |
Q |
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| T |
41148145 |
cactttgtatacaacacgtttaagttgtaataagcataaactcaatcataaaaaatgaaatttcatgacttataaataattaaagtaatactttacgtgc |
41148244 |
T |
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| Q |
101 |
tccgagtgatctaaaatcatataatgctattaagattatttactatcatctcttttacattgttccagcaaaaatatggttattttttcacgtttttaac |
200 |
Q |
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| T |
41148245 |
tccgagtgatctaaaatcatatagtgctattaagattatttactattatctcttttacattgttccagcaaaaatatggttattttttcacgtttttaac |
41148344 |
T |
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| Q |
201 |
aagctagtgaaccaaagtaattcaaatacgaatagaacagtgaagaacaataaccatatcatgattg |
267 |
Q |
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| T |
41148345 |
aagctagtgaaccaaagtaattcaaatacgaatagaacagtgaagaacaataaccatatcatgattg |
41148411 |
T |
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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 46705844 - 46705762
Alignment:
| Q |
155 |
ttacattgttccagcaaaaatatggttattttttcacgtttttaacaagctagtgaaccaaagtaattcaaatacgaatagaa |
237 |
Q |
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| T |
46705844 |
ttacatttttccagcaaaaatattgctatttttttgcgtttttatcaagccagtgaaccaaagcaattcaaacacgaatagaa |
46705762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 4934457 - 4934528
Alignment:
| Q |
154 |
tttacattgttccagcaaaaatatggttattttttcacgtttttaacaagctagtgaaccaaagtaattcaaa |
226 |
Q |
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| T |
4934457 |
tttacattgttctagcaaaactattgctatttt-tcacgtttttatcaaaccagtacaccaaagtaattcaaa |
4934528 |
T |
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