View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19928_high_16 (Length: 249)
Name: NF19928_high_16
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19928_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 44724192 - 44724424
Alignment:
| Q |
1 |
cctccaattataactaaagagacaacacttaaataagccgctaaaataataaagttgggtttcatgaaccaacactaataaagttgtgagtgaggcagat |
100 |
Q |
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| T |
44724192 |
cctccaattataactaaagagacaacacttaaataagccgctaaaataataaagttgggtttcatgaaccaacactaataaagttgtgagtgaggcagat |
44724291 |
T |
|
| Q |
101 |
ccttaccaacccatcttttattgacgaatatttttatagctatatatatattgataaactactaatattgacattttagaaaaggattaagatccttgtn |
200 |
Q |
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| T |
44724292 |
ccttaccaacccatcttttattgacgaatatttttatag----ttatatattgataaactactaatattaacattttagaaaaggattaagatccttgta |
44724387 |
T |
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| Q |
201 |
nnnnnnnngattgaggttaccttttatagttaacttc |
237 |
Q |
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|||||||||||||||| |||||||||||| |
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| T |
44724388 |
aaaaaaaagattgaggttacctttaatagttaacttc |
44724424 |
T |
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