View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19928_high_22 (Length: 228)
Name: NF19928_high_22
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19928_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 16053098 - 16053304
Alignment:
| Q |
1 |
ccaaatcatcagaaggcttggcggcgtaatcccccaatctactaaatttaagtgatttcaaaagagggcaagatcggccaaggactgcaatagatacctc |
100 |
Q |
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| T |
16053098 |
ccaaatcatcagaaggcttggcggcataaacccccaatctactaattttaagtgatttcaaaagagggcaagatcggccaaggactgcaatagatacctc |
16053197 |
T |
|
| Q |
101 |
agttagactggtatctgaaatgttaagcttttctaacagcggaagcttcctcgcaacttcaataaatccttcatccgaaatttcatagcaatctacaaac |
200 |
Q |
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| T |
16053198 |
agttagcctgttatctgaaatgacaagcttctctaacagcggaagcttcctcacagcttcactaaatccttcttctgaaatttcatagcaatctacaaac |
16053297 |
T |
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| Q |
201 |
cgcatgg |
207 |
Q |
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||||||| |
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| T |
16053298 |
cgcatgg |
16053304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 36325811 - 36325915
Alignment:
| Q |
44 |
aaatttaagtgatttcaaaagagggcaagatcggccaaggactgcaatagatacctcagttagactggtatctgaaatgttaagcttttctaacagcgga |
143 |
Q |
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| T |
36325811 |
aaatttaagcgatttcaaaagagggcaagatcgaccaagggcttcaagagagacctcagttagataagaatgtgaaatgtcaaccttctctaacagcgga |
36325910 |
T |
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| Q |
144 |
agctt |
148 |
Q |
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| T |
36325911 |
agctt |
36325915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 36313433 - 36313564
Alignment:
| Q |
44 |
aaatttaagtgatttcaaaagagggcaagatcggccaaggactgcaatagatacctcagttagactggtatctgaaatgttaagcttttctaacagcgga |
143 |
Q |
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||||||||| ||||||||||||||||| ||||| |||||| || ||| ||| || |||||||| | || |||||| || ||| || ||| ||||| |
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| T |
36313433 |
aaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcgga |
36313532 |
T |
|
| Q |
144 |
agcttcctcgcaacttcaataaatccttcatc |
175 |
Q |
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| T |
36313533 |
agctttctcacagcttcactaaatccttcatc |
36313564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 29649520 - 29649466
Alignment:
| Q |
117 |
gaaatgttaagcttttctaacagcggaagcttcctcgcaacttcaataaatcctt |
171 |
Q |
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||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||| |
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| T |
29649520 |
gaaatgttatgcttttccaacaacggaaactttttcgcaacttcaataaatcctt |
29649466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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