View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19928_high_5 (Length: 457)
Name: NF19928_high_5
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19928_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 8e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 85 - 329
Target Start/End: Original strand, 7707410 - 7707655
Alignment:
| Q |
85 |
ttgaatgaatatttgtgagtggaagaagttgtatttagagatatatttgctagtgggtttgggctagaaaattgggccttttccccaaactcgtagaaaa |
184 |
Q |
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| T |
7707410 |
ttgaatgaatatttgtgagtggaagaagttgtatttatagatatatttgctactggatttgggctagaaaattaggtgtgttccccaaactcgtagaaaa |
7707509 |
T |
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| Q |
185 |
a-tacagcaaaacgtacttttttagcacaaaacgcgcatcgtacgtcaggttaggtgtgtggcagctaacaaagagcaaagttctctctgtctcatgcac |
283 |
Q |
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| T |
7707510 |
aataaagcaaaacgtattttttcagcacaaaacgtgcatcgtgcgtcaggttaggcgtgtggcagctaacaaagagcaaaattctctctgtcccatgcac |
7707609 |
T |
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| Q |
284 |
ctgggcaacatgagacacacacgaggcgtgtggcctcaacctctcg |
329 |
Q |
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| T |
7707610 |
ctgggcaacatgagacacacacgaggcgtgtggcctcaacctctcg |
7707655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 7706012 - 7706087
Alignment:
| Q |
8 |
ctccaaaaatatataatgtttaaatctatattctatatcagatgatcaaacatggtatagaattatcaaaaaagaa |
83 |
Q |
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| T |
7706012 |
ctccaaaaatatataatgtttaaatctatattctatatcagatgatcaaacatggtatagaattatcaaaaaagaa |
7706087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 7707703 - 7707745
Alignment:
| Q |
372 |
aatgtgatctcggaattttgggactgaattcccccaacttgta |
414 |
Q |
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| T |
7707703 |
aatgtgatcttggaattttggaactgaattcccccaacttgta |
7707745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 52998757 - 52998722
Alignment:
| Q |
86 |
tgaatgaatatttgtgagtggaagaagttgtattta |
121 |
Q |
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| T |
52998757 |
tgaatgaatatttatgagtggaagaagttgtattta |
52998722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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