View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19928_low_15 (Length: 266)
Name: NF19928_low_15
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19928_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 41147828 - 41148067
Alignment:
| Q |
16 |
ctaaatgaagaagcttgcaatggttatggtcatttgatatgtcttaatgacattgaaggagaggaacagtgtttggaaatgatcgtcaagaagaagaatg |
115 |
Q |
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| T |
41147828 |
ctaaatgaagaagcttgcaatggttatggtcatttgatatgtcttaatgacattgaaggag--gaatagtgtttggaaatgatcgtgaagaagaagaatg |
41147925 |
T |
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| Q |
116 |
aatgtgttttcttttcaatcattttggtccccgcccagtcccacgttcaatttagtcattttcattaacaatttgaactattttgactaagataactttt |
215 |
Q |
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| T |
41147926 |
aatgtgttttcttttcaatcattttggtccccgcccagtcccacgttcaatttagtcattttcattaataatttgaactattttgactaagataattttt |
41148025 |
T |
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| Q |
216 |
ttataactccctctgtcgcatgttaaaatcgatgagacctgc |
257 |
Q |
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| T |
41148026 |
ttataactccctctatcgcatgttaaaattgatgagatctgc |
41148067 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 33184802 - 33184758
Alignment:
| Q |
30 |
ttgcaatggttatggtcatttgatatgtcttaatgacattgaagg |
74 |
Q |
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| T |
33184802 |
ttgcaatggttatggccatttggtatgtcttaatggcattgaagg |
33184758 |
T |
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