View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19928_low_17 (Length: 244)
Name: NF19928_low_17
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19928_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 45079577 - 45079787
Alignment:
| Q |
16 |
cagatatcacaccaataacctgcacaaaacaatggttataagtctagcacgcagaaaatataaataatcacatgtaacgtttatattcttggatataaat |
115 |
Q |
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| T |
45079577 |
cagatatcacaccaataacctgcacaaaacaatggttataagtctagcacgcagaaaatataaataatcacatgtaacgtttatattcttggatataaat |
45079676 |
T |
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| Q |
116 |
aggcaacataaaaaacttttgagacattgtcatagaacaagtatatgaacaatacataaaaactatgcagaaagaaaattacataggaattttcgaatct |
215 |
Q |
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| T |
45079677 |
aggcaacataaaaaacttttgagacattgtcatagaaca---atatgaacaatacataaaaactatgcagaaagaaaattacataggaattttcgaatct |
45079773 |
T |
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| Q |
216 |
tgcactcttcatat |
229 |
Q |
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|||||||||||||| |
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| T |
45079774 |
tgcactcttcatat |
45079787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 45068923 - 45068971
Alignment:
| Q |
179 |
tatgcagaaagaaaattacataggaattttcgaatcttgcactcttcat |
227 |
Q |
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| T |
45068923 |
tatgcacaaagagaattacataggaatttccgaatattgcactcttcat |
45068971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 45076560 - 45076632
Alignment:
| Q |
160 |
atgaacaatacataaaaactatgcagaaagaaaat-----tacataggaattttcgaatcttgcactcttcat |
227 |
Q |
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| T |
45076560 |
atgaacaatacataaaaactatgcacagagaaaattacagtacataggaattttcgaatactggactcttcat |
45076632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 45076453 - 45076485
Alignment:
| Q |
16 |
cagatatcacaccaataacctgcacaaaacaat |
48 |
Q |
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| T |
45076453 |
cagagatcacaccaataacctgcacaaaacaat |
45076485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 34506227 - 34506436
Alignment:
| Q |
21 |
atcacaccaataacctgcacaaaacaatggt--tataagtcta-gcacgcagaaaatataaataatcacatgtaacgtttatattcttggatataaatag |
117 |
Q |
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||||||| ||||||||||||||||||||| | ||||||| || | || ||||||||| |||||| ||||||||||||||| ||||| || |||| || |
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| T |
34506227 |
atcacacaaataacctgcacaaaacaatgataatataagtttatggacacagaaaataaaaataactacatgtaacgtttattttcttagacataagtaa |
34506326 |
T |
|
| Q |
118 |
gcaacataaaaaacttttgagacattgtcatagaacaagtatatgaacaatacataaaaactatgcagaaagaaaattacataggaattttcgaatcttg |
217 |
Q |
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| T |
34506327 |
ggaatataaaaaactactgaagcattgacatagaacaggtatatgaacaacacataaaaactatgcacaatgaaaattacaaaggaattttcgaatcttg |
34506426 |
T |
|
| Q |
218 |
cactcttcat |
227 |
Q |
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||||||||| |
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| T |
34506427 |
gactcttcat |
34506436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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