View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19928_low_6 (Length: 433)
Name: NF19928_low_6
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19928_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 66 - 417
Target Start/End: Original strand, 28902537 - 28902885
Alignment:
| Q |
66 |
ttgtctttcccatttttaacgatgccacgggcaatgtaaatatcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaac |
165 |
Q |
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|||| ||| |||||||||| |||| |||||||| | |||| |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
28902537 |
ttgttttttccatttttaatgatgtcacgggcagtataaacatcctgagaattcagcccttcttttttcttgataacttgataatattcaaaaaagtaac |
28902636 |
T |
|
| Q |
166 |
tttcaactgtatctggatctctcatatctaccttctcctgcaaatgaaaaaatacataatcttaagatatacgaataaagagaaaattgatacagcctgg |
265 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |
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| T |
28902637 |
tttctattgtatctggatctctcatatctaccttctcctgcaaatgaaaaaatacataatcataagatatatgaataaagagaaaattgatacagcatgg |
28902736 |
T |
|
| Q |
266 |
ataaagagatgaactttcgttactcaattctgagtttccaaccaagaaaataatgaactaaaacaattttgaagttcaatgagaaaaatgtcacattttg |
365 |
Q |
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| T |
28902737 |
ataaa---atgaactttctttactcaattcagagtttccaaccaagaaaataatgaactaaaacaattttgaagttcaatgagaaaaatgtcgcattttg |
28902833 |
T |
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| Q |
366 |
acattttgttatagtctataaggtaaaattctataactaggatcgtactttt |
417 |
Q |
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| T |
28902834 |
acattttgttatagtctataaggtaaaattctataactaggatcgtactttt |
28902885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 28926122 - 28926386
Alignment:
| Q |
1 |
tgctcacatcagaatcaccagtatcatcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
28926122 |
tgctcacatcagaatcaccagtatcatcttccccctcacctatttcatacggatccaagtcacgcttgtttttcccatttttaacgatgtcacgggcaat |
28926221 |
T |
|
| Q |
101 |
gtaaatatcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctaccttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28926222 |
gtaaatatcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttc |
28926321 |
T |
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| Q |
201 |
tcctgcaaatgaaaaaatacataatcttaagatatacgaataaagagaaaattgatacagcctgg |
265 |
Q |
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|||||||||||||||| ||||||| ||||||||| | |||| ||||||| ||||||||||| |
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| T |
28926322 |
tcctgcaaatgaaaaagcacataattacaagatatacagagaaagggaaaatttatacagcctgg |
28926386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 215
Target Start/End: Original strand, 28916912 - 28917101
Alignment:
| Q |
26 |
atcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgtaaatatcctgagaattcagccct |
125 |
Q |
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|||||||||||||||| ||||||| || ||||||||||||||| || |||||||||| |||| |||||||||| |||| ||||||||||||| |||| |
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| T |
28916912 |
atcttccccctcacctctttcatacggttccaagtcacgcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccaccct |
28917011 |
T |
|
| Q |
126 |
tctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctaccttctcctgcaaatgaaaa |
215 |
Q |
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| T |
28917012 |
tccttttttttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa |
28917101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 6 - 295
Target Start/End: Original strand, 28892538 - 28892821
Alignment:
| Q |
6 |
acatcagaatcaccagtatcatcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgtaaa |
105 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||| | |||| ||| | ||||||||| |||| |
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| T |
28892538 |
acatcagactcaccggtatcatcttccccctcacctatttcatatggatc------acacttgttttttctatttataatagtatcacgggcaaaataaa |
28892631 |
T |
|
| Q |
106 |
tatcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctaccttctcctg |
205 |
Q |
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| T |
28892632 |
cttgctgagaattcagcccttcttttttcttgataatttgataataatcaaaaaagtaactttcttgtgtatctggatctttcatatcgaccttttcctg |
28892731 |
T |
|
| Q |
206 |
caaatgaaaaaatacataatcttaagatatacgaataaagagaaaattgatacagcctggataaagagatgaactttcgttactcaattc |
295 |
Q |
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||||||||||| ||||||| |||| |||| | |||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
28892732 |
caaatgaaaaagcacataatgataaggtatatggataaagaggaaatttatacagcctggatgaagagatgaactttctttactcaattc |
28892821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 157 - 354
Target Start/End: Original strand, 28935823 - 28936019
Alignment:
| Q |
157 |
aaaagtaactttcaactgtatctggatctctcatatctaccttctcctgcaaatgaaaaaatacataatcttaagatatacgaataaagagaaaattgat |
256 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||||| ||| ||||| |||||||||| | |||| ||||||||| | | |||||||||||| || |
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| T |
28935823 |
aaaagtaactttcaaatgtatctggatctttcatatctatcttttcctgaaaatgaaaaagcatgtaattataagatatatggagaaagagaaaatttat |
28935922 |
T |
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| Q |
257 |
acagcctggataaagagatgaactttcgttactcaattctgagtttccaaccaagaaaataatgaactaaaacaattttgaagttcaatgagaaaaat |
354 |
Q |
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| T |
28935923 |
accgcctggataaagagatgaactt-ctttactcaattccgagtttccaaccaagaaaagaatgaaataaaacattattaaagttctatgagaaaaat |
28936019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 28902493 - 28902536
Alignment:
| Q |
7 |
catcagaatcaccagtatcatcttccccctcacctatttcatat |
50 |
Q |
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| T |
28902493 |
catcagattcaccagtatcgtcttccccctcacctacttcatat |
28902536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 219 - 360
Target Start/End: Original strand, 34009634 - 34009775
Alignment:
| Q |
219 |
acataatcttaagatatacgaataaagagaaaattgatacagcctggataaagagatgaactttcgttactcaattctgagtttccaaccaagaaaataa |
318 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
34009634 |
acataattataagatatacaaataaagagaaaattgatacagcctggatatagagatgaacttattttactcaattctgagattccaaccaagaaaataa |
34009733 |
T |
|
| Q |
319 |
tgaactaaaacaattttgaagttcaatgagaaaaatgtcaca |
360 |
Q |
| |
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|||| ||||||||| |||||||||||| ||||||| |||||| |
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| T |
34009734 |
tgaaataaaacaatattgaagttcaataagaaaaaagtcaca |
34009775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 34009522 - 34009631
Alignment:
| Q |
3 |
ctcacatcagaatcaccagtatcatcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgt |
102 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| | ||| |||| |||| |||||||||| | |
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| T |
34009522 |
ctcacatcagattcaccagtatcatcttccccctcacctacttcatatggatccaagtcacacttgttttttcaattgttaatgatgtcacgggcaatat |
34009621 |
T |
|
| Q |
103 |
aaatatcctg |
112 |
Q |
| |
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||| |||||| |
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| T |
34009622 |
aaacatcctg |
34009631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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