View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19928_low_7 (Length: 430)

Name: NF19928_low_7
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19928_low_7
NF19928_low_7
[»] chr6 (24 HSPs)
chr6 (14-415)||(14268428-14268829)
chr6 (31-203)||(3404767-3404939)
chr6 (32-137)||(34572966-34573070)
chr6 (26-212)||(18147315-18147501)
chr6 (26-110)||(19305473-19305557)
chr6 (26-136)||(15480314-15480423)
chr6 (26-141)||(20148326-20148438)
chr6 (26-141)||(22184390-22184502)
chr6 (27-98)||(689867-689938)
chr6 (72-131)||(12203616-12203674)
chr6 (26-101)||(30681001-30681076)
chr6 (31-101)||(33596875-33596945)
chr6 (31-110)||(4251042-4251121)
chr6 (26-137)||(9291992-9292101)
chr6 (26-93)||(19331695-19331762)
chr6 (27-101)||(14080494-14080567)
chr6 (26-95)||(12488009-12488078)
chr6 (26-75)||(19730624-19730673)
chr6 (26-83)||(25008415-25008472)
chr6 (26-95)||(31295548-31295617)
chr6 (26-83)||(34187308-34187365)
chr6 (27-95)||(23768203-23768271)
chr6 (170-210)||(25008300-25008340)
chr6 (170-210)||(34572892-34572932)
[»] chr4 (13 HSPs)
chr4 (26-340)||(47253286-47253599)
chr4 (26-130)||(19809710-19809813)
chr4 (26-217)||(12683794-12683985)
chr4 (26-212)||(2674470-2674652)
chr4 (38-110)||(19643723-19643795)
chr4 (30-217)||(29157115-29157302)
chr4 (168-211)||(39194221-39194264)
chr4 (26-95)||(15514574-15514643)
chr4 (26-95)||(15742166-15742235)
chr4 (167-210)||(10982014-10982057)
chr4 (77-131)||(40979049-40979102)
chr4 (38-99)||(14003073-14003134)
chr4 (26-94)||(14602029-14602097)
[»] chr2 (14 HSPs)
chr2 (26-267)||(45257994-45258234)
chr2 (26-210)||(27846417-27846601)
chr2 (26-101)||(12127670-12127745)
chr2 (26-101)||(24499798-24499873)
chr2 (26-110)||(3586372-3586456)
chr2 (31-110)||(12168986-12169066)
chr2 (26-110)||(36267507-36267591)
chr2 (26-129)||(45715004-45715106)
chr2 (26-95)||(18770323-18770392)
chr2 (26-110)||(20120356-20120440)
chr2 (26-98)||(24755477-24755549)
chr2 (38-93)||(15825175-15825230)
chr2 (27-101)||(19919073-19919147)
chr2 (26-95)||(19050448-19050517)
[»] chr1 (11 HSPs)
chr1 (26-267)||(5671779-5672019)
chr1 (26-96)||(33101519-33101589)
chr1 (44-200)||(16030422-16030577)
chr1 (26-110)||(22414784-22414868)
chr1 (26-110)||(26977749-26977833)
chr1 (26-97)||(12177395-12177466)
chr1 (26-110)||(34273096-34273180)
chr1 (26-101)||(16050403-16050478)
chr1 (27-131)||(2140926-2141025)
chr1 (26-110)||(52565589-52565673)
chr1 (26-95)||(25408105-25408174)
[»] chr8 (15 HSPs)
chr8 (26-137)||(30477650-30477760)
chr8 (26-195)||(13754767-13754936)
chr8 (26-98)||(5859824-5859896)
chr8 (77-267)||(23497006-23497194)
chr8 (31-101)||(24070866-24070936)
chr8 (26-110)||(6928088-6928172)
chr8 (26-101)||(17927711-17927786)
chr8 (26-98)||(21416747-21416819)
chr8 (37-101)||(26916905-26916969)
chr8 (26-101)||(18322952-18323027)
chr8 (26-110)||(24507466-24507550)
chr8 (44-97)||(17698296-17698349)
chr8 (26-82)||(23269255-23269311)
chr8 (26-84)||(3459508-3459566)
chr8 (44-130)||(13765016-13765101)
[»] chr7 (13 HSPs)
chr7 (26-110)||(26762909-26762993)
chr7 (26-101)||(21161250-21161325)
chr7 (26-212)||(5863196-5863382)
chr7 (68-212)||(16203773-16203917)
chr7 (68-212)||(16204342-16204486)
chr7 (26-100)||(7486554-7486628)
chr7 (26-140)||(9135330-9135443)
chr7 (26-101)||(9867946-9868021)
chr7 (37-131)||(39879407-39879501)
chr7 (26-97)||(12644794-12644866)
chr7 (26-95)||(13292136-13292205)
chr7 (27-95)||(5929024-5929092)
chr7 (172-212)||(21161415-21161455)
[»] chr5 (11 HSPs)
chr5 (26-110)||(22903102-22903186)
chr5 (26-200)||(27083146-27083319)
chr5 (26-207)||(26994507-26994688)
chr5 (27-101)||(25333745-25333819)
chr5 (167-306)||(19990879-19991012)
chr5 (26-203)||(20025292-20025469)
chr5 (167-208)||(8939061-8939102)
chr5 (71-130)||(34493567-34493625)
chr5 (169-203)||(29278942-29278976)
chr5 (31-95)||(24647302-24647366)
chr5 (26-62)||(26348125-26348161)
[»] chr3 (11 HSPs)
chr3 (26-212)||(30606937-30607123)
chr3 (26-101)||(17143756-17143831)
chr3 (26-209)||(9800984-9801165)
chr3 (34-103)||(28723779-28723848)
chr3 (34-110)||(16704419-16704495)
chr3 (230-333)||(2311610-2311713)
chr3 (36-101)||(21342294-21342359)
chr3 (45-110)||(28715486-28715551)
chr3 (26-95)||(1770834-1770903)
chr3 (26-135)||(2311808-2311916)
chr3 (26-95)||(12516194-12516263)
[»] scaffold0023 (1 HSPs)
scaffold0023 (26-141)||(95778-95892)
[»] scaffold0140 (1 HSPs)
scaffold0140 (26-95)||(6307-6376)
[»] scaffold0360 (1 HSPs)
scaffold0360 (26-110)||(13931-14015)
[»] scaffold0291 (2 HSPs)
scaffold0291 (26-110)||(15428-15512)
scaffold0291 (26-101)||(8584-8659)
[»] scaffold0054 (1 HSPs)
scaffold0054 (26-141)||(68770-68882)
[»] scaffold0505 (1 HSPs)
scaffold0505 (26-101)||(7894-7969)
[»] scaffold0294 (1 HSPs)
scaffold0294 (26-95)||(256-325)
[»] scaffold0174 (1 HSPs)
scaffold0174 (26-100)||(29286-29358)
[»] scaffold0205 (2 HSPs)
scaffold0205 (26-95)||(10928-10997)
scaffold0205 (26-95)||(22895-22964)
[»] scaffold0103 (1 HSPs)
scaffold0103 (26-95)||(40805-40874)
[»] scaffold0002 (2 HSPs)
scaffold0002 (44-95)||(121024-121075)
scaffold0002 (41-95)||(379740-379794)
[»] scaffold0263 (1 HSPs)
scaffold0263 (26-95)||(20510-20579)
[»] scaffold0012 (1 HSPs)
scaffold0012 (88-136)||(149217-149264)
[»] scaffold0005 (1 HSPs)
scaffold0005 (26-94)||(215281-215349)


Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 14268428 - 14268829
Alignment:
Q  14 atgtgcttgtaggttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14268428 atgtgcttgtaggttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtg 14268527  T
Q  114 aagttaagtcacccttatgtaggcacgcacaaagataaccgtttccgggtttacggcgtgtgattagggagcggttagaggacacgtgtaaggtgatccc 213  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14268528 aagctaagtcacccttatataggcacgcacaaagataaccgtttccgggtttatggcgtgtgattagggagcggttagaggacacgtgtaaggtgatccc 14268627  T
Q  214 cacgtgcaaggcatgtttggatgtgatgcagtgccctaaagttggcgtgttcctctagatgtggagtcttaaggcggtgcaattttaggccacgtttcat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14268628 cacgtgcaaggcatgtttggatgtgatgcagtgccctaaagttggcgtgttcctctagatgtggagtcttaaggcggtgcaattttaggccacgtttcat 14268727  T
Q  314 actgggattggtcttctgaccgatccatagtatatatgtatgacttagttagtattgtccacgttgctgattttaatttgtccacattagcatgggtaac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14268728 actgggattggtcttctgaccgatccatagtatatatgtatgacttagttagtattgtccacgttgctgattttaatttgtccacattagcatgggtaac 14268827  T
Q  414 tt 415  Q
    ||    
T  14268828 tt 14268829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 203
Target Start/End: Complemental strand, 3404939 - 3404767
Alignment:
Q  31 cactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcaccctta 130  Q
    ||||| ||| || ||||||||||||||||| ||| | ||||||||||||||||| |||||| ||||||||| | ||| |||||||||||| | |||||||    
T  3404939 cactctaacacttaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcataccttga-gggtgaagttaaattaccctta 3404841  T
Q  131 tgtaggcacgcacaaagataaccgtttccggg-tttacggcgtgtgattagggagcggttagaggacacgtgta 203  Q
    | ||||| ||    || |||||||| || ||| ||| | ||||||||||| |||| ||||||||||||||||||    
T  3404840 tataggcgcgtgtgaaaataaccgtctctgggttttgcagcgtgtgattaaggagtggttagaggacacgtgta 3404767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 34573070 - 34572966
Alignment:
Q  32 actccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcacccttat 131  Q
    ||||||||||| |||| |||||| ||||||||| | ||||||||||||||||  ||||||||||||||||   ||| |||||||||||||||||||||||    
T  34573070 actccaacgctcaagttagtaatagaactaagaaaaagtgtgtagaaagtgtggtgaaaagtgaatcatacattga-gggtgaagttaagtcacccttat 34572972  T
Q  132 gtaggc 137  Q
     |||||    
T  34572971 ataggc 34572966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 18147315 - 18147501
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||| |||||||||||| |||||| |||||||||  ||| | ||||||||||||||||| |||||||||| ||||| | | | ||||||||  | |||||    
T  18147315 gttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgactcataccttta-gggtgaagcaatgtcac 18147413  T
Q  126 ccttatgtaggcacgcacaaaga-taaccgtttccggg-tttacggcgtgtgattagggagcggttagaggacacgtgtaaggtgatcc 212  Q
    |||||| ||||  ||||    || ||||||  || ||| ||| | ||||||||||||||| ||||||||||||| ||||||||||||||    
T  18147414 ccttatataggtgcgcattgggattaaccgcctctgggttttgcagcgtgtgattaggga-cggttagaggacatgtgtaaggtgatcc 18147501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 19305473 - 19305557
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    |||||||||  |||||| ||||||||||||||||| ||  | ||||||||||||||||| |||||||||||||||| | ||||||    
T  19305473 gttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgaggg 19305557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 15480423 - 15480314
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||| ||||| ||| || |||||| ||||| |||| ||| | ||||||||||||||||| |||||||||||||||| | ||| | |||||| ||||||||    
T  15480423 gttatcactcgaactctcaagtcaataatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaatcataccttga-gagtgaagctaagtcac 15480325  T
Q  126 ccttatgtagg 136  Q
    |||||| ||||    
T  15480324 ccttatatagg 15480314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 20148326 - 20148438
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||||||||||| |||| |||| |||||||||| | ||| | |||||  |||||||||| |||||||||||||||| | |||  |||||||  | |||||    
T  20148326 gttagcactccatcgctcaagttagtaatggaattgagaaagagtgt--agaaagtgttgtgaaaagtgaatcataccttga-tggtgaagcaaggtcac 20148422  T
Q  126 ccttatgtaggcacgc 141  Q
    |||||| |||||||||    
T  20148423 ccttatataggcacgc 20148438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 22184502 - 22184390
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||||||||||| |||| |||| |||||||||| | ||| | |||||  |||||||||| |||||||||||||||| | |||  |||||||  | |||||    
T  22184502 gttagcactccatcgctcaagttagtaatggaattgagaaagagtgt--agaaagtgttgtgaaaagtgaatcataccttga-tggtgaagcaaggtcac 22184406  T
Q  126 ccttatgtaggcacgc 141  Q
    |||||| |||||||||    
T  22184405 ccttatataggcacgc 22184390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 689938 - 689867
Alignment:
Q  27 ttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatc 98  Q
    |||||||| ||| ||| ||||||||||||||||| ||| |  ||||||| |||||||| |||||||||||||    
T  689938 ttagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtgaatc 689867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 12203674 - 12203616
Alignment:
Q  72 tgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcacccttat 131  Q
    ||||||||||||| ||||||||||||||||   ||| |||||||||||||||||||||||    
T  12203674 tgtagaaagtgttgtgaaaagtgaatcatactttga-gggtgaagttaagtcacccttat 12203616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 30681001 - 30681076
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||||||||||| |||||||||||| |||| | | | || |||||||| || || ||||||||||||||||    
T  30681001 gttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgtagaatgtattgtgaaaagtgaatcata 30681076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 33596875 - 33596945
Alignment:
Q  31 cactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||| |||||| || ||||||||| |||||||| | ||||||||||||||||| ||||||  ||||||||    
T  33596875 cactctaacgctcaactcagtaatgaaactaagaaaaagtgtgtagaaagtgttgtgaaaatggaatcata 33596945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 4251121 - 4251042
Alignment:
Q  31 cactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    |||||||||| | |||||||||||| || | ||| | |||||| ||| |||||| |||||||| ||||||||| ||||||    
T  4251121 cactccaacgttcaagtcagtaatgaaaatgagaaagagtgtggagagagtgttgtgaaaagtaaatcatatcttgaggg 4251042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 9292101 - 9291992
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||||||| | |||||| ||||||||| ||||||| ||| ||||| |||| |||||||   ||||||||||||||| | ||| |||||||| ||| ||||    
T  9292101 gttagcacgctaacgctcaagtcagtattggaactgagaaatagtatgtaaaaagtgtgg-gaaaagtgaatcataccttga-gggtgaagctaactcac 9292004  T
Q  126 ccttatgtaggc 137  Q
    | |||| |||||    
T  9292003 ctttatataggc 9291992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 19331762 - 19331695
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagt 93  Q
    ||||| ||||| ||||| ||||||||||||||||||||| | || || ||||||||||| || |||||    
T  19331762 gttagtactccgacgcttaagtcagtaatggaactaagaaagagagtatagaaagtgttgtgtaaagt 19331695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 14080494 - 14080567
Alignment:
Q  27 ttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    |||||||||  ||||| |||| ||||||| |||| ||| | ||||||||| ||||||| ||||||||||||||||    
T  14080494 ttagcactctgacgctcaagttagtaatg-aactgagaaagagtgtgtagtaagtgttgtgaaaagtgaatcata 14080567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 12488078 - 12488009
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    |||||||||| ||||||||||||| |||| ||||||| | | ||||||||   |||||| ||||||||||    
T  12488078 gttagcactctaacgctgaagtcaataatagaactaaaatagagtgtgtaagtagtgttgtgaaaagtga 12488009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 19730673 - 19730624
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgta 75  Q
    ||||||||||||||||| |||||| |||||||||| ||| | ||||||||    
T  19730673 gttagcactccaacgctcaagtcaataatggaactgagaaagagtgtgta 19730624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 25008472 - 25008415
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgt 83  Q
    |||| |||||||||||| ||||||||||||||| | ||| | |||||||| |||||||    
T  25008472 gttaacactccaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaagtgt 25008415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 31295617 - 31295548
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||| | ||||| |||||||||||| |||| ||| | ||||||||  ||||||| ||||||||||    
T  31295617 gttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtga 31295548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 34187308 - 34187365
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgt 83  Q
    |||||||| ||||| || ||||||||||||||||| ||| | |||||||| |||||||    
T  34187308 gttagcacaccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgt 34187365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 23768203 - 23768271
Alignment:
Q  27 ttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    |||||||||||| ||| ||||||||||| ||||| | | ||||||||||  ||||||| || |||||||    
T  23768203 ttagcactccaatgctcaagtcagtaattgaactgaaagatagtgtgtaagaagtgttgtggaaagtga 23768271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 25008340 - 25008300
Alignment:
Q  170 cgtgtgattagggagcggttagaggacacgtgtaaggtgat 210  Q
    ||||||||||| |||||||||||||||||||| | ||||||    
T  25008340 cgtgtgattagagagcggttagaggacacgtgcatggtgat 25008300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 34572932 - 34572892
Alignment:
Q  170 cgtgtgattagggagcggttagaggacacgtgtaaggtgat 210  Q
    ||||||||||||||| | |||||||||||||||| ||||||    
T  34572932 cgtgtgattagggagtgattagaggacacgtgtagggtgat 34572892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 340
Target Start/End: Original strand, 47253286 - 47253599
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||||| ||||||||||||||||| ||| | |||||||| |||||||| |||||||||||||||| | ||| |||||||| ||||||||    
T  47253286 gttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtgaatcataccttga-gggtgaagctaagtcac 47253384  T
Q  126 ccttatgtaggcacgcacaaagataaccgtttccggg-tttacggcgtgtgattagggagcggttagaggacacgtgtaaggtgatccccacgtgcaagg 224  Q
    |||||| ||||| ||||  |  ||||| || |||||| ||| ||| |||||||||| ||||  ||||||||||| ||||  ||||||| | || |  |||    
T  47253385 ccttatataggcgcgcatgataataactgtctccgggttttgcggtgtgtgattagagagcaattagaggacacatgtagagtgatcctcgcgcg-gagg 47253483  T
Q  225 catgtttggatgtgatgcagtgccctaaagttggcgtgttcctctagatgtggagtcttaaggcggtgcaattttaggccacgtttcatactgggattgg 324  Q
    | |  ||||||||||||  |||| | || ||||  ||||||||  ||| | |||| ||||||||||||||| ||| | |||||| |||   ||||||||     
T  47253484 cgtacttggatgtgatgtggtgcaccaacgttgatgtgttccttcagacgcggagccttaaggcggtgcaagtttggaccacgtgtcaacgtgggattgt 47253583  T
Q  325 tcttctgaccgatcca 340  Q
    |||||||| |||||||    
T  47253584 tcttctgatcgatcca 47253599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 19809710 - 19809813
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||||| |||||||||||| |||||||| | ||||||||||||||||| |||||||||||| ||| | ||| |||||||  ||||||||    
T  19809710 gttagcactccaacgctcaagtcagtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttga-gggtgaaactaagtcac 19809808  T
Q  126 cctta 130  Q
    |||||    
T  19809809 cctta 19809813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 12683794 - 12683985
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||||| |||| ||||||| |||| ||| | ||||||||||||||||| |||||||||||||||| | | | ||||||||  |  ||||    
T  12683794 gttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcata-ccttaagggtgaagcaagttcac 12683892  T
Q  126 ccttatgtaggcacgcacaaag-ataaccgtttccgggtt-tacggcgtgtgattagggagcggttagaggacacgtgtaaggtgatccccacg 217  Q
    |||||| ||||| ||||  ||| |||||||| |||| ||| | || ||| |||||| ||| | | |||||||||| ||||||||||||| ||||    
T  12683893 ccttatctaggcgcgcattaagcataaccgtctccgagttatgcgacgtatgattacgga-cagctagaggacacatgtaaggtgatcctcacg 12683985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 2674652 - 2674470
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||||  |||||| ||||| |||| |||    |||||||||||||||| |||||||||||||||| | ||| || |||||| |  ||||    
T  2674652 gttagcactccaacgcacaagtcaataatgtaactgaga----gtgtgtagaaagtgttgtgaaaagtgaatcataccttga-ggatgaagtaagttcac 2674558  T
Q  126 ccttatgtaggcacgcacaaag-ataaccgtttccgg-gtttacggcgtgtgattagggagcggttagaggacacgtgtaaggtgatcc 212  Q
    |||||| || || |||    || |||||||| |||||  ||| ||||||||||||||||| | ||||||||||||||||| ||||||||    
T  2674557 ccttatataagcgcgcgttgagcataaccgtctccggattttgcggcgtgtgattaggga-cagttagaggacacgtgtagggtgatcc 2674470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 19643723 - 19643795
Alignment:
Q  38 acgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||| ||||||||||||||||| ||| | |||||||||||||| || |||||||||||||||| | ||||||    
T  19643723 acgcttaagtcagtaatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtgaatcataccttgaggg 19643795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 29157115 - 29157302
Alignment:
Q  30 gcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcaccctt 129  Q
    ||||||||||||| |||| |||||||||||| ||| | ||||||||| ||||||| || |||||||| |||| | |||  |||||||| |  ||||||||    
T  29157115 gcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtgaaccataccttga-tggtgaagtaagttcaccctt 29157213  T
Q  130 atgtaggcacgcaca-aagataaccgtttccgggtt-tacggcgtgtgattagggagcggttagaggacacgtgtaaggtgatccccacg 217  Q
    || ||||| |||  | | ||||||||| || ||||| | ||||   |||||||||| |||||||||||||| |||| | |||||| ||||    
T  29157214 atataggcgcgcgtagaggataaccgtctctgggttatgcggctaatgattaggga-cggttagaggacacatgtaggatgatcctcacg 29157302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 39194221 - 39194264
Alignment:
Q  168 ggcgtgtgattagggagcggttagaggacacgtgtaaggtgatc 211  Q
    |||||||||||||||||||||||||||||||| ||| |||||||    
T  39194221 ggcgtgtgattagggagcggttagaggacacgggtatggtgatc 39194264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 15514643 - 15514574
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||||||||| ||||||||||||||||| | | | ||||||||  ||||||| || |||||||    
T  15514643 gttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagtga 15514574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 15742235 - 15742166
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||  ||||| ||||||||||||||||| ||| | ||||||||  ||||||| ||||||||||    
T  15742235 gttagcactcttacgctcaagtcagtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtga 15742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 10982014 - 10982057
Alignment:
Q  167 cggcgtgtgattagggagcggttagaggacacgtgtaaggtgat 210  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||    
T  10982014 cggcttgtgattagggagcggttagaggacacatgtatggtgat 10982057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 40979102 - 40979049
Alignment:
Q  77 aaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcacccttat 131  Q
    |||||||  ||||||||||||| |||| |||||| ||||||||||||||||||||    
T  40979102 aaagtgtggtgaaaagtgaatcgtatcttgaggg-tgaagttaagtcacccttat 40979049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 14003134 - 14003073
Alignment:
Q  38 acgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatca 99  Q
    ||||| ||||||||||||||||| ||| | ||| ||| ||||||||| |||||| |||||||    
T  14003134 acgctcaagtcagtaatggaactgagaaagagtttgtggaaagtgttatgaaaaatgaatca 14003073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 14602097 - 14602029
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtg 94  Q
    ||||||| ||||||||| |||||||||||| |||| | | | ||||||||  ||||||| |||||||||    
T  14602097 gttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 14602029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 45258234 - 45257994
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||| |||||||| ||| |||| ||||||| |||||||| | | ||||| ||||||||| |||||||||||||||| | ||| ||||||||  |||||||    
T  45258234 gttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgtgaaaagtgaatcataccttga-gggtgaagcaaagtcac 45258136  T
Q  126 ccttatgtaggcacgcacaaagataaccgtttccg-ggtttacggcgtgtgattagggagcggttagaggacacgtgtaaggtgatccccacgtgcaagg 224  Q
    |||||| ||||  | |   | ||||||||| |||| | ||| |||||||||||||||||||||||||||||||| || | |||||||| | |  |  |||    
T  45258135 ccttatataggtcctcgtgacgataaccgtctccgagttttgcggcgtgtgattagggagcggttagaggacacatgcagggtgatcctcgcacg-gagg 45258037  T
Q  225 catgtttggatgtgatgcagtgccctaaagttggcgtgttcct 267  Q
    | || ||||||||||||| |||| |||||||| || |||||||    
T  45258036 cgtgcttggatgtgatgcggtgcactaaagtttgcatgttcct 45257994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 27846601 - 27846417
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||| | ||||||||||||||||| ||| | ||| ||||||||||||| || |||||||||  || | ||| |||||||||||||||||    
T  27846601 gttagcactccaacgatcaagtcagtaatggaactgagaaacagtttgtagaaagtgttgtgtaaagtgaattgtaccttga-gggtgaagttaagtcac 27846503  T
Q  126 ccttatgtaggcacg-cacaaagataaccgtttccgggtttacggcgtgtgattagggagcggttagaggacacgtgtaaggtgat 210  Q
    || ||  ||| |||| |  | | ||||| || || ||||||   | ||||||||||||| || |||||||||||||||| ||||||    
T  27846502 ccatacatagacacgcctgagaaataactgtctctgggttttgcgtgtgtgattagggaacgattagaggacacgtgtatggtgat 27846417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 12127745 - 12127670
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||||||||||| |||||||||||| ||||||||    |||||||||||||||| ||||||||||||||||    
T  12127745 gttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaaagtgaatcata 12127670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 24499798 - 24499873
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||||||||||| ||||||||||||||| | ||| | |||||||||||| |||| ||||||||||||||||    
T  24499798 gttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaagtgaatcata 24499873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 3586372 - 3586456
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||| ||||| ||||| ||||||||||||||||| ||| | |||| |||||||||||| |||||||||||||||| | ||||||    
T  3586372 gttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtgaatcataccttgaggg 3586456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 12168986 - 12169066
Alignment:
Q  31 cactccaacgctg-aagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||||||  ||||||||||||||||||||| | ||||||||||||||||| |||||||||||| ||| | ||||||    
T  12168986 cactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgaggg 12169066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 36267507 - 36267591
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    |||| |||||||||||| |||||||||||| |||| ||| | ||||||||||||| ||| |||||||||||||||| | ||||||    
T  36267507 gttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtgaatcataccttgaggg 36267591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 45715004 - 45715106
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||||| |||||||||||| |||| ||| | |||||||| |||||||  |||||| ||||||||| | |||  ||||||| ||||||||    
T  45715004 gttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtggtgaaaattgaatcataccttga-aggtgaagctaagtcac 45715102  T
Q  126 cctt 129  Q
    ||||    
T  45715103 cctt 45715106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 18770323 - 18770392
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||  ||||| |||||||||||| || | ||| | ||||||||||||||||| ||||||||||    
T  18770323 gttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 18770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 20120356 - 20120440
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||||| || || |||||||||||| |||| ||| | ||||||| ||||||| | ||| |||||||||||| | ||||||    
T  20120356 gttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaatcataccttgaggg 20120440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 24755477 - 24755549
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatc 98  Q
    ||||| |||||||| || |||||||| ||||||||  || | |||||||||||| |||| |||||||||||||    
T  24755477 gttagtactccaaccctcaagtcagtgatggaactctgaaaaagtgtgtagaaattgttgtgaaaagtgaatc 24755549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 15825175 - 15825230
Alignment:
Q  38 acgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagt 93  Q
    ||||| ||||| ||||||||||| ||| | ||||||||||||||||| ||||||||    
T  15825175 acgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagt 15825230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 19919147 - 19919073
Alignment:
Q  27 ttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    |||| |||| |||||  |||||| |||||||| | ||| | ||| ||||||||||||| ||||||||||||||||    
T  19919147 ttagaactctaacgccaaagtcaataatggaaatgagaaagagtatgtagaaagtgttgtgaaaagtgaatcata 19919073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 19050517 - 19050448
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||  ||||| ||||||||||| ||||||||| | || |||||  ||||||| ||||||||||    
T  19050517 gttagcactctgacgctcaagtcagtaatagaactaagaaagagagtgtaagaagtgttgtgaaaagtga 19050448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 267
Target Start/End: Original strand, 5671779 - 5672019
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||||| |||| |||||||||||| ||| | ||||||||||||||||| ||||||||||||||||   |||  ||||||||||||||||    
T  5671779 gttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcatacattga-aggtgaagttaagtcac 5671877  T
Q  126 ccttatgtaggcacgca-caaagataaccgtttcc-gggtttacggcgtgtgattagggagcggttagaggacacgtgtaaggtgatccccacgtgcaag 223  Q
     ||||| ||| | ||||   || ||||||   |||  | ||| |  |||||||||| |||||||| |||||||| || || |||||||| | ||||  ||    
T  5671878 tcttatatagacgcgcattgaaaataaccacgtccaagttttgcatcgtgtgatta-ggagcggtaagaggacatgtatagggtgatcctcgcgtg-gag 5671975  T
Q  224 gcatgtttggatgtgatgcagtgccctaaagttggcgtgttcct 267  Q
     | |||||||||||| |||||||| |||||||||||||||||||    
T  5671976 acgtgtttggatgtggtgcagtgcactaaagttggcgtgttcct 5672019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 33101589 - 33101519
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaa 96  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||| |||||||||||    
T  33101589 gttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaa 33101519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 16030422 - 16030577
Alignment:
Q  44 aagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcacccttatgtaggcacgcac 143  Q
    ||||||||||||||||| |   | ||||||||||||||||| |||||||||||||||| | ||| ||| |||| |||| ||||||||| ||||| | ||     
T  16030422 aagtcagtaatggaactgaataagagtgtgtagaaagtgttgtgaaaagtgaatcataccttga-gggcgaagctaagccacccttatataggcgcacat 16030520  T
Q  144 aaagataaccgtttccgggtttacggcgtgtgattagggagcggttagaggacacgt 200  Q
     ||||||||   | | |  |||  |||||||||||||||||||||||||| ||||||    
T  16030521 gaagataactactccggattttgtggcgtgtgattagggagcggttagagaacacgt 16030577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 22414784 - 22414868
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||||  ||||| |||||||||||| |||| | | | ||||||||||||||||| |||||||||||||||||| ||||||    
T  22414784 gttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttgtgaaaagtgaatcatatcttgaggg 22414868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 26977749 - 26977833
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||||||||||| ||||||||||||||||  ||| | |||||||||||||| || |||||| ||||||||| | ||||||    
T  26977749 gttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaaatgaatcataccttgaggg 26977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 12177395 - 12177466
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaat 97  Q
    ||||||||||| || || ||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||    
T  12177395 gttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 12177466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 34273096 - 34273180
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||||||| ||| |||||||||| |||||| ||| | ||||||||||||||||| || ||||||| ||||| | ||||||    
T  34273096 gttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtgactcataccttgaggg 34273180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 16050403 - 16050478
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||||||||||| |||||| | |||||||| ||| | ||||||||||||||||  ||||||||||| ||||    
T  16050403 gttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtgtggtgaaaagtgaaccata 16050478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 2141025 - 2140926
Alignment:
Q  27 ttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcacc 126  Q
    |||||||||||||||| ||||||||||| |||  ||||     ||||||||||||||| || |||||||| |||| | ||| |||||||| |||||||||    
T  2141025 ttagcactccaacgctcaagtcagtaattgaaaaaagaa----tgtgtagaaagtgttgtggaaagtgaaccataccttga-gggtgaagctaagtcacc 2140931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 52565589 - 52565673
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||||  ||||| |||||||||| |||||| | | | |||| | |||||||||| |||||||||||||||| | ||||||    
T  52565589 gttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtgaaaagtgaatcataacttgaggg 52565673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 25408105 - 25408174
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||||| ||| |||||||||||| |||| | | | ||||||||  ||||||| ||||||||||    
T  25408105 gttagcactccaatgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtga 25408174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 30477650 - 30477760
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||||| |||||||||| | |||| ||| | ||||||||||||||||| |||||||||||||||| | ||| ||||||||| | |||||    
T  30477650 gttagcactccaacgctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttga-gggtgaagtaatgtcac 30477748  T
Q  126 ccttatgtaggc 137  Q
    |||||| |||||    
T  30477749 ccttatataggc 30477760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 13754767 - 13754936
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||| |||| || |||| |||||||||||| |||| ||| | ||||||||||||||||| || |||||||||| || | ||| |||||||| ||||||||    
T  13754767 gttaacactacatcgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcctaccttga-gggtgaagctaagtcac 13754865  T
Q  126 ccttatgtaggcacgcacaaagataaccgt-ttccgggtttacggcgtgtgattagggagcggttagagga 195  Q
     ||||| ||||||||||  |  |||||||| ||| |  ||| |||||||||||||| || |||||||||||    
T  13754866 tcttatataggcacgcatgagaataaccgtcttcggattttgcggcgtgtgattagtgaacggttagagga 13754936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 5859824 - 5859896
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatc 98  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||||| || |||||||||| |||||||||    
T  5859824 gttagcactccaacgctcaagtcaataatggaactaagaaatagtgtgttgagagtgttttgagaagtgaatc 5859896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 267
Target Start/End: Complemental strand, 23497194 - 23497006
Alignment:
Q  77 aaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcacccttatgtaggcacgcacaaagataaccgtttccgggtttacggcgtgtga 176  Q
    |||||||| |||| ||||||||||| | |||||| | |||  ||||||||||||| ||||| | |   |||||||  || |||||||||    |||||||    
T  23497194 aaagtgttgtgaatagtgaatcataccttgagggtt-aagcaaagtcacccttatataggcgctcgtgaagataattgtctccgggttttgcacgtgtga 23497096  T
Q  177 ttagggagcggttagaggacacgtgtaaggtgatccccacgtgcaaggcatgtttggatgtgatgcagtgccctaaagttggcgtgttcct 267  Q
    |||||||||||||||||||||| || | |||||||| |||||| ||||| || || |||| | ||| |||| ||||||||||| |||||||    
T  23497095 ttagggagcggttagaggacacatgcagggtgatcctcacgtg-aaggcgtgctttgatgcggtgcggtgcactaaagttggcatgttcct 23497006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 24070866 - 24070936
Alignment:
Q  31 cactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||| || ||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||||    
T  24070866 cactccaacacttaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgagaagtgaatcata 24070936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 6928172 - 6928088
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||| | |||| || ||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||| | ||||||    
T  6928172 gttagcatttcaacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgaggg 6928088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 17927786 - 17927711
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||||||||||| ||||||||||||||||| |||   ||| ||||||||||||| ||||| ||||||||||    
T  17927786 gttagcactccaacgcttaagtcagtaatggaactgagattgagtatgtagaaagtgttatgaaaggtgaatcata 17927711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 21416747 - 21416819
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatc 98  Q
    ||||||||||| ||||| |||||||||||| |||| ||| | ||||||||||||||||| |||||| ||||||    
T  21416747 gttagcactccgacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatc 21416819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 26916969 - 26916905
Alignment:
Q  37 aacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    |||||| ||||||||||||||||| ||| | ||||||||||||||||| |||||||||| |||||    
T  26916969 aacgctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaagtgagtcata 26916905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 18322952 - 18323027
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    |||| |||||||||||| ||||||||||| ||||| ||| | | |||||||||| |||| ||||||||||||||||    
T  18322952 gttaacactccaacgctcaagtcagtaatagaactgagaaagattgtgtagaaaatgttgtgaaaagtgaatcata 18323027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 24507466 - 24507550
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||| ||||||||| | |||||| |||||||| | ||| | ||||| ||||||||||| |||||||||||||||| | ||||||    
T  24507466 gttagtactccaacgatcaagtcaataatggaaatgagaaagagtgtctagaaagtgttgtgaaaagtgaatcataccttgaggg 24507550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 17698349 - 17698296
Alignment:
Q  44 aagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaat 97  Q
    ||||||||||||||||  ||| | ||||||||||||||||| ||||||||||||    
T  17698349 aagtcagtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgaat 17698296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 23269255 - 23269311
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtg 82  Q
    |||||||||||||| || ||||||||||||||||| | | | |||||||||||||||    
T  23269255 gttagcactccaacacttaagtcagtaatggaactgataaagagtgtgtagaaagtg 23269311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 3459566 - 3459508
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgtt 84  Q
    |||||||||||  |||| ||||||||||||||||| ||  | |||||||||||||||||    
T  3459566 gttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgtt 3459508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 13765016 - 13765101
Alignment:
Q  44 aagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcaccctta 130  Q
    |||| ||||||| |||| ||| | ||||||||||||||||| || ||||||||| || || |||  ||||||| |||||||||||||    
T  13765016 aagtgagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaataatgtcttga-aggtgaagctaagtcaccctta 13765101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 26762993 - 26762909
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||||||||||| |||||||||| |||||| | | ||||||||||||||||||| |||||||||||||||| | ||||||    
T  26762993 gttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtgaatcataccttgaggg 26762909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 21161250 - 21161325
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||||||||||| |||||||||||||| |||||| |  |||||||||||||||| ||||||||||||||||    
T  21161250 gttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtgaaaagtgaatcata 21161325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 5863196 - 5863382
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||||||||| |||||| ||||||||||| ||||| ||| | |||||||||||| |||| | |||||||||||||| | ||| ||||| ||  | |||||    
T  5863196 gttagcactcaaacgctcaagtcagtaatcgaactgagaaagagtgtgtagaaaatgttgtaaaaagtgaatcataccttga-gggtggagcaatgtcac 5863294  T
Q  126 ccttatgtaggcacgc-acaaagataaccgtttccgggttt-acggcgtgtgattagggagcggttagaggacacgtgtaaggtgatcc 212  Q
    |||| | ||||| |||     | |||||||  ||||||||| ||||| |||||||||||| |||||||||||||||||||| |||||||    
T  5863295 ccttgtataggcgcgcgttggaaataaccgcctccgggtttcacggcatgtgattaggga-cggttagaggacacgtgtaacgtgatcc 5863382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 16203773 - 16203917
Alignment:
Q  68 agtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcacccttatgtaggcacgcacaaagataaccgtttccgggtttac 167  Q
    |||||||| |||||||| ||||||||||| |||| | | |||| |||||  ||||||||||||| ||||  | | |   ||||||||| |||| ||||      
T  16203773 agtgtgtataaagtgttatgaaaagtgaaccataccttaaggg-tgaagaaaagtcacccttatataggagctcgcgttgataaccgtctccgtgtttcg 16203871  T
Q  168 -ggcgtgtgattagggagcggttagaggacacgtgtaaggtgatcc 212  Q
     |||||||||||||||||||||||||||||||||||| ||||||||    
T  16203872 tggcgtgtgattagggagcggttagaggacacgtgtagggtgatcc 16203917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 16204342 - 16204486
Alignment:
Q  68 agtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcacccttatgtaggcacgcacaaagataaccgtttccgggttt-a 166  Q
    |||||||| |||||||| ||||||||||| |||| | | |||| |||||  || |||||||||| ||||  | | |   ||||||||| |||| |||| |    
T  16204342 agtgtgtataaagtgttgtgaaaagtgaaccataccttaaggg-tgaagaaaattcacccttatataggagcccgcgttgataaccgtctccgtgtttca 16204440  T
Q  167 cggcgtgtgattagggagcggttagaggacacgtgtaaggtgatcc 212  Q
     |||||||||||||||||||||||||||||||||||| ||||||||    
T  16204441 tggcgtgtgattagggagcggttagaggacacgtgtagggtgatcc 16204486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 7486554 - 7486628
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcat 100  Q
    ||||||||||||||||| || |||||||||||||| ||| | | ||||||||| ||||| |||||||||||||||    
T  7486554 gttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtgaatcat 7486628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 9135443 - 9135330
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||||||||| |||||| ||||||||||||||| | ||| | |||||||| ||| |||| |||||||||||||||| | ||| ||||||||  || ||||    
T  9135443 gttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtgaatcataccttga-gggtgaagcaaattcac 9135345  T
Q  126 ccttatgtaggcacg 140  Q
    |||||| ||| ||||    
T  9135344 ccttatatagacacg 9135330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 9868021 - 9867946
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||||  ||||| ||||||||||||||||| ||  | ||| ||||||||||||| | ||||||||||||||    
T  9868021 gttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgttaaaagtgaatcata 9867946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 39879407 - 39879501
Alignment:
Q  37 aacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcacccttat 131  Q
    |||||| |||||||||||| |||| ||| | |||||||| |||||||| | |||||||||||||  | ||||||| ||||  | |||||||||||    
T  39879407 aacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaagtgaatcatgccatgaggggggaagcaatgtcacccttat 39879501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 12644794 - 12644866
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgtt-ttgaaaagtgaat 97  Q
    ||||||||||| ||||| | ||||||||||||||| ||| | ||||||| |||||||||  ||||||||||||    
T  12644794 gttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtgttggtgaaaagtgaat 12644866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 13292205 - 13292136
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    |||||||||| |||||| |||||||||||| |||| | | | ||||||||  ||||||| ||||||||||    
T  13292205 gttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttgtgaaaagtga 13292136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 5929092 - 5929024
Alignment:
Q  27 ttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||||| || ||||||||||||||||| | | | || |||||  ||||||| ||||||||||    
T  5929092 ttagcactccaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtga 5929024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 21161415 - 21161455
Alignment:
Q  172 tgtgattagggagcggttagaggacacgtgtaaggtgatcc 212  Q
    |||||||||||||||||| ||||||||||| | ||||||||    
T  21161415 tgtgattagggagcggttggaggacacgtgaagggtgatcc 21161455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 22903102 - 22903186
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||| ||||||| ||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||| | ||||||    
T  22903102 gttagcacttcaacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgaggg 22903186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 27083319 - 27083146
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||||||||||||| || |||||||||| | ||||  || | ||||||||||||||||| |||||||||||||||| | ||| |||||||||||||||||    
T  27083319 gttagcactccaacactcaagtcagtaa-gaaactgtgaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttga-gggtgaagttaagtcac 27083222  T
Q  126 ccttatgtaggcacgcacaaagataaccgtttcc-gggtttacggcgtgtgattagggagcggttagaggacacgt 200  Q
    ||||   ||||| |||   |  ||||| || ||| || ||| |||||||||||||| |||| ||||||||||||||    
T  27083221 ccttgcataggcgcgcgtgagaataactgtctccaggttttgcggcgtgtgattagagagcagttagaggacacgt 27083146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 26994688 - 26994507
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||| ||||| ||||||||||||||| | ||| | ||||| ||||| ||||| |||||||||||||||| | || |||||||||  | |||||    
T  26994688 gttagcactccgacgctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtgaatcataccttg-ggggtgaagcaaggtcac 26994590  T
Q  126 ccttatgtaggcacgcacaaaga-taaccgt-ttccgggtttacggcgtgtgattagggagcggttagaggacacgtgtaaggt 207  Q
    |||||| ||||| |||    ||| ||||||| |||  | ||| ||||||||||||||||| || ||||||||||| ||||||||    
T  26994589 ccttatataggcgcgcgttgagagtaaccgtcttcgagttttgcggcgtgtgattaggga-cgattagaggacacatgtaaggt 26994507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 25333745 - 25333819
Alignment:
Q  27 ttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    |||| ||||| ||||| |||||||||||| |||||||| | ||||||||||||||||| | ||||||||||||||    
T  25333745 ttagtactccgacgctcaagtcagtaatgtaactaagagagagtgtgtagaaagtgttgttaaaagtgaatcata 25333819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 19991012 - 19990879
Alignment:
Q  167 cggcgtgtgattagggagcggttagaggacacgtgtaaggtgatccccacgtgcaaggcatgtttggatgtgatgcagtgccctaaagttggcgtgttcc 266  Q
    |||||||||||||||||||||||||| |||| ||||| |||||||| | || |  ||| ||| |||||||||     || | |||||||||| |||||||    
T  19991012 cggcgtgtgattagggagcggttagaagacatgtgtagggtgatcctcgcgcg-gagggatggttggatgtg-----gtacactaaagttggtgtgttcc 19990919  T
Q  267 tctagatgtggagtcttaaggcggtgcaattttaggccac 306  Q
    |  ||  | |||| ||||||||||||||| ||||||||||    
T  19990918 ttcaggcgcggagccttaaggcggtgcaagtttaggccac 19990879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 20025292 - 20025469
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||| ||||||||||||   ||||| |||| |||| ||| | ||||||||||||||||| || ||||||||||||  | ||| |||||||| || |||||    
T  20025292 gttaacactccaacgctactgtcaggaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcattccttga-gggtgaagctaggtcac 20025390  T
Q  126 ccttatgtaggcacgcacaaagataaccgtttccggg-tttacggcgtgtgattagggagcggttagaggacacgtgta 203  Q
    ||||||  |||| |||   |  |||||||| |||||| |||  || |||||||||||||| ||||| ||| || |||||    
T  20025391 ccttatacaggcgcgcgtgagaataaccgtctccgggttttgtggtgtgtgattagggagtggttataggtcatgtgta 20025469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 8939061 - 8939102
Alignment:
Q  167 cggcgtgtgattagggagcggttagaggacacgtgtaaggtg 208  Q
    |||||||||||||||||||||||||||||||| |||| ||||    
T  8939061 cggcgtgtgattagggagcggttagaggacacatgtacggtg 8939102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 34493567 - 34493625
Alignment:
Q  71 gtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcaccctta 130  Q
    |||||||||||||| |||||||||||||||| | ||| |||||||  |||||||||||||    
T  34493567 gtgtagaaagtgttgtgaaaagtgaatcataccttga-gggtgaaactaagtcaccctta 34493625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 29278976 - 29278942
Alignment:
Q  169 gcgtgtgattagggagcggttagaggacacgtgta 203  Q
    ||||||||||||||||||||||||||||| |||||    
T  29278976 gcgtgtgattagggagcggttagaggacatgtgta 29278942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 24647302 - 24647366
Alignment:
Q  31 cactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    |||||||||||| || |||||||||||||| | | | ||||||||  ||||||| ||||||||||    
T  24647302 cactccaacgctcaattcagtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtga 24647366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 26348161 - 26348125
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaa 62  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  26348161 gttagcactccaacgctcaagtcattaatggaactaa 26348125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 30606937 - 30607123
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||| ||||||||| ||||||||||||||| | ||| | |||| |||||||||||| |||||||||||| ||| | ||| ||||||||| | | |||    
T  30606937 gttagcattccaacgctcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaagtgaattataccttga-gggtgaagtaaggccac 30607035  T
Q  126 ccttatgtaggcacgcacaaag-ataaccgtttccgggttt-acggcgtgtgattagggagcggttagaggacacgtgtaaggtgatcc 212  Q
    |||||| ||||| |||   ||| ||||| || |||||||||  | ||||||||||||||| |||||||||||||| | ||| |||||||    
T  30607036 ccttatataggcgcgcgttaagaataactgtctccgggtttcgccgcgtgtgattaggga-cggttagaggacacatataacgtgatcc 30607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 17143831 - 17143756
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||||| ||||| ||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||    
T  17143831 gttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcata 17143756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 9801165 - 9800984
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||||||||| ||| || ||||||||||| ||||  ||| | ||||||||||||||||| |||||||||||||||| | ||| ||||||||  | |||||    
T  9801165 gttagcactc-aacactcaagtcagtaatagaacagagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttga-gggtgaagcaatgtcac 9801068  T
Q  126 ccttatgtaggcacgca-caaagataaccgtttccgggtttacggcgtgtgattagggagcggttagaggacacgtgtaaggtga 209  Q
    |||||| ||||||||||  ||| ||  |   ||| || ||| ||||||||||||||||| |||||||||||||| |||| |||||    
T  9801067 ccttatataggcacgcattaaaaatggcgcattcgggttttgcggcgtgtgattaggga-cggttagaggacacatgtagggtga 9800984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 28723848 - 28723779
Alignment:
Q  34 tccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatc 103  Q
    ||||||||| |||||| |||||||||||||| | |||||||||||| |||| ||||||||||||| ||||    
T  28723848 tccaacgctcaagtcactaatggaactaagaaagagtgtgtagaaaatgttgtgaaaagtgaatcgtatc 28723779  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 16704419 - 16704495
Alignment:
Q  34 tccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||||||||||||||||||  | ||| | || |||||||||||||| |||||||||||||||| | ||||||    
T  16704419 tccaacgctgaagtcagtaatggagttgagaaagagagtgtagaaagtgttgtgaaaagtgaatcataccttgaggg 16704495  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 333
Target Start/End: Complemental strand, 2311713 - 2311610
Alignment:
Q  230 ttggatgtgatgcagtgccctaaagttggcgtgttcctctagatgtggagtcttaaggcggtgcaattttaggccacgtttcatactgggattggtcttc 329  Q
    ||||||||||||| |||| |||||||||| ||||||||  || || |  ||||||||||||||||| |||||| |||||  ||   ||||||||||||||    
T  2311713 ttggatgtgatgcggtgcactaaagttggtgtgttccttcaggtgcgaggtcttaaggcggtgcaagtttaggtcacgtgccaacgtgggattggtcttc 2311614  T
Q  330 tgac 333  Q
    ||||    
T  2311613 tgac 2311610  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 21342359 - 21342294
Alignment:
Q  36 caacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||| ||||||||||||||||| | | | ||||| ||||||||||| ||||||||||||||||    
T  21342359 caacgctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaaaagtgaatcata 21342294  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 28715551 - 28715486
Alignment:
Q  45 agtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    |||||||||||||||| ||| | |||||||| |||||||| |||||||||||||||| | ||||||    
T  28715551 agtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgaatcataccttgaggg 28715486  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 1770834 - 1770903
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||| ||||| ||||| |||| |||||||||||| ||  | ||||||||||||||||| ||||||||||    
T  1770834 gttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtga 1770903  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 2311916 - 2311808
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||||| || |||| || |||  | ||| | | ||||||||||||||| ||||| |||||||||| | ||| ||||||||  | |||||    
T  2311916 gttagcactccaacgctcaaatcagcaagggatttgagaaagaatgtgtagaaagtgttgtgaaaggtgaatcataccttga-gggtgaagcaatgtcac 2311818  T
Q  126 ccttatgtag 135  Q
    |||||| |||    
T  2311817 ccttatttag 2311808  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 12516194 - 12516263
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||| ||||| |||| |||||||||||| ||| | | ||||||  ||||||| ||||||||||    
T  12516194 gttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtga 12516263  T

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Target: scaffold0023 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 95892 - 95778
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    |||| |||| ||||||| |||| |||||||||||| ||| | |||| |||||||||||| |||||||||||||||| | | | ||||||||  | |||||    
T  95892 gttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtgaatcataccttca-gggtgaagcaacgtcac 95794  T
Q  126 ccttatgtaggcacgc 141  Q
    |||||| |||||||||    
T  95793 ccttatataggcacgc 95778  T

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Target: scaffold0140 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 6307 - 6376
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||| | | ||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  6307 gttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtga 6376  T

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Target: scaffold0360 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 13931 - 14015
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||| ||||||| ||| |||||||||||| |||| ||| | ||||||||||||||||| ||| |||||||||||| | ||||||    
T  13931 gttagtactccaaagctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaatcataccttgaggg 14015  T

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Target: scaffold0291 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 15512 - 15428
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggg 110  Q
    ||||||||||| |||||  |||||||||||||||| ||| | ||| | ||||||||||| |||||||||||||||| | ||||||    
T  15512 gttagcactccgacgctccagtcagtaatggaactgagaaagagtatctagaaagtgttgtgaaaagtgaatcataccttgaggg 15428  T

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Target: scaffold0291; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 8659 - 8584
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    ||||||||| | ||||| |||||||||||| |||| | | | ||||||||||||||||| ||||||||||||||||    
T  8659 gttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaagtgttgtgaaaagtgaatcata 8584  T

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Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 68882 - 68770
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagttaagtcac 125  Q
    ||||||||||||||||| |||| ||||||||||||  || | || || ||||||||||| |||||||||||||||| | ||| ||| ||||  | |||||    
T  68882 gttagcactccaacgctcaagttagtaatggaact--gagaaagagtatagaaagtgttgtgaaaagtgaatcataccttga-gggagaagcaaggtcac 68786  T
Q  126 ccttatgtaggcacgc 141  Q
    |||||| |||||||||    
T  68785 ccttatataggcacgc 68770  T

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Target: scaffold0505 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 7894 - 7969
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcata 101  Q
    |||||||||| |||||| || ||||||||| || | ||| | ||||||||||||||||| ||||||||||||||||    
T  7894 gttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcata 7969  T

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Target: scaffold0294 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 325 - 256
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||| ||||| ||||||||||||||||| ||| | ||||||||  ||||||| ||||||||||    
T  325 gttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 256  T

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Target: scaffold0174 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 29358 - 29286
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtgaatcat 100  Q
    ||||||||||||||||| |||||||||||| || ||||    || |||||||||||||| |||||||||||||||    
T  29358 gttagcactccaacgctcaagtcagtaatgaaaataag--gaagagtgtagaaagtgttgtgaaaagtgaatcat 29286  T

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Target: scaffold0205 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 10997 - 10928
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||||||||| |||||| |||||||||| | | | ||||||||  ||||||| ||||||||||    
T  10997 gttagcactccaacgctcaagtcaataatggaactgaaagagagtgtgtaagaagtgttgtgaaaagtga 10928  T

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Target: scaffold0205; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 22895 - 22964
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||  ||||| ||||||||||||||||| ||| || |||||||  ||||||| ||||||||||    
T  22895 gttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtga 22964  T

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Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 40805 - 40874
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||||||||| |||||||| |||||||| | | | || |||||| ||||||| ||||||||||    
T  40805 gttagcactccaacgctcaagtcagtgatggaactgaaagagagagtgtaggaagtgttatgaaaagtga 40874  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 121075 - 121024
Alignment:
Q  44 aagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||||||||| ||| | |||||||| |||||||| ||||||||||    
T  121075 aagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtga 121024  T

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Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 379740 - 379794
Alignment:
Q  41 ctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    |||||||||||||||||||| ||| | ||||||||  ||||||| ||||||||||    
T  379740 ctgaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtga 379794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 20579 - 20510
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtga 95  Q
    ||||||||||  ||||| |||||| ||| |||||| ||| | |||||||||||| |||| ||||||||||    
T  20579 gttagcactctgacgctcaagtcactaaaggaactgagaaagagtgtgtagaaaatgttatgaaaagtga 20510  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 149217 - 149264
Alignment:
Q  88 aaaagtgaatcatatcgtgaggggtgaagttaagtcacccttatgtagg 136  Q
    |||||||||||||| | || |||||||||||||||||||||||| ||||    
T  149217 aaaagtgaatcataccttg-ggggtgaagttaagtcacccttatatagg 149264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 215281 - 215349
Alignment:
Q  26 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgtgtagaaagtgttttgaaaagtg 94  Q
    ||||||| ||||||||| |||||||||||| |||| | | | ||||||||  ||||||| |||||||||    
T  215281 gttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtg 215349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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