View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19928_low_8 (Length: 401)

Name: NF19928_low_8
Description: NF19928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19928_low_8
NF19928_low_8
[»] chr7 (9 HSPs)
chr7 (26-184)||(11752623-11752781)
chr7 (26-185)||(38349458-38349615)
chr7 (26-186)||(28713703-28713861)
chr7 (41-182)||(37536317-37536456)
chr7 (26-184)||(38754897-38755051)
chr7 (56-185)||(43359028-43359155)
chr7 (26-97)||(42974463-42974534)
chr7 (26-154)||(47480044-47480168)
chr7 (109-185)||(30922709-30922782)
[»] chr8 (9 HSPs)
chr8 (26-184)||(11904879-11905035)
chr8 (40-185)||(35200596-35200739)
chr8 (34-155)||(10592010-10592129)
chr8 (30-185)||(41075595-41075749)
chr8 (26-185)||(8368371-8368527)
chr8 (30-154)||(31774754-31774879)
chr8 (54-184)||(5749029-5749155)
chr8 (138-185)||(42110569-42110616)
chr8 (26-130)||(27497198-27497302)
[»] chr5 (5 HSPs)
chr5 (34-184)||(43100208-43100356)
chr5 (26-185)||(12248299-12248456)
chr5 (26-184)||(33687673-33687829)
chr5 (52-185)||(8076307-8076438)
chr5 (109-185)||(20151484-20151557)
[»] chr1 (10 HSPs)
chr1 (40-186)||(47571561-47571705)
chr1 (26-183)||(29731214-29731369)
chr1 (30-184)||(33502524-33502676)
chr1 (26-183)||(48489475-48489630)
chr1 (26-97)||(26040996-26041067)
chr1 (34-185)||(19989273-19989419)
chr1 (30-95)||(7178198-7178263)
chr1 (56-97)||(12907635-12907676)
chr1 (26-132)||(15225039-15225147)
chr1 (26-86)||(6487754-6487814)
[»] chr2 (4 HSPs)
chr2 (34-186)||(40216443-40216593)
chr2 (185-235)||(7708496-7708546)
chr2 (336-392)||(7708301-7708357)
chr2 (25-90)||(33300004-33300069)
[»] chr4 (10 HSPs)
chr4 (26-184)||(48525352-48525508)
chr4 (26-185)||(25783908-25784064)
chr4 (30-184)||(41277245-41277399)
chr4 (26-184)||(5817380-5817536)
chr4 (99-185)||(14149959-14150043)
chr4 (52-127)||(40947158-40947233)
chr4 (26-184)||(45995895-45996050)
chr4 (27-98)||(24059217-24059288)
chr4 (26-97)||(51579346-51579417)
chr4 (109-185)||(39631009-39631082)
[»] chr3 (3 HSPs)
chr3 (27-186)||(46135554-46135709)
chr3 (34-176)||(36674527-36674667)
chr3 (26-96)||(23004782-23004852)
[»] chr6 (5 HSPs)
chr6 (26-185)||(12748237-12748395)
chr6 (61-184)||(16718058-16718179)
chr6 (52-172)||(32720411-32720529)
chr6 (17-95)||(29429600-29429679)
chr6 (138-185)||(9521811-9521858)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 11752623 - 11752781
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    |||||||||| || |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  11752623 gtggcatgtatcacttgtacacctacatataattgtgacatgtgttcacgtggtccccacacacataaaaaactcaccttttgtgtctctcacacactct 11752722  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  11752723 cacatagtagcgtggtacaatgtgtgtatggaaaaaaagatgtccatgaaatattatcc 11752781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 38349615 - 38349458
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||| ||||| |||||||||  |||||||||||||||||||| || ||| || | |||||||||| ||| ||||||||||||||||||| |||||||    
T  38349615 gtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccctacacacataagaaactcatcttttgtgtctctcaaacactct 38349516  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    ||||| | |  |||||||||||||||||||||| ||| | ||| ||||||| ||||||||    
T  38349515 cacatggaa--gtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcct 38349458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 28713703 - 28713861
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||| ||||| |||||||||  |||||||||||||||||||| || ||| || | |||||||||| ||| ||||||||||||||||||| |||||||    
T  28713703 gtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtgttccctacacacataagaaactcatcttttgtgtctctcaaacactct 28713802  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatccta 186  Q
    |||||   |  |||||||||| ||||||||||||||| | ||| ||||||| |||||||||    
T  28713803 cacat--gaaagtggtacaatatgtgtatagagaaaagggtgttcatgaaacattatccta 28713861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 182
Target Start/End: Complemental strand, 37536456 - 37536317
Alignment:
Q  41 tgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagtagcgtgg 140  Q
    ||||||||  |||||||||||||||||||| || | |||| | ||||||| || ||| ||||||||||| ||||||| ||||||||||||   |  ||||    
T  37536456 tgtacacccacatataattgtgacatgtgtccatgcggtccctacacacacaagaaactcatcttttgtatctctcaaacactctcacat--gaaagtgg 37536359  T
Q  141 tacaatgtgtgtatagagaaaaagatgtccatgaaatattat 182  Q
    |||||||||||||||||||||| | ||| ||||||| |||||    
T  37536358 tacaatgtgtgtatagagaaaatggtgttcatgaaacattat 37536317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 38755051 - 38754897
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||||||||| ||| |||||   | |||||| |||||||||| || ||| || ||||||||| |||||| |||  |||  |||||||||||||||||    
T  38755051 gtggcatgtaccacttgaacacccatacataattatgacatgtgtccatgtgatccccacacaca-aaaaaactcacatttattgtctctcacacactct 38754953  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    ||||| |    |||||| ||||| ||||| || |||||| ||| |||||||||||||||    
T  38754952 cacatggg---gtggtataatgtatgtatggaaaaaaaggtgtacatgaaatattatcc 38754897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 43359028 - 43359155
Alignment:
Q  56 aattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagtagcgtggtacaatgtgtgtata 155  Q
    |||||||||| |||| |||||||||   ||||| | || |||||||| |||| | ||||||||||||||||||||   || ||| |||| |||||||||     
T  43359028 aattgtgacacgtgtccacgtggtcctaacacataaaagaaattcattttttttatctctcacacactctcacat--gagggtgatacattgtgtgtatg 43359125  T
Q  156 gagaaaaagatgtccatgaaatattatcct 185  Q
    ||||||| | |||| |||||| ||||||||    
T  43359126 gagaaaatggtgtcaatgaaacattatcct 43359155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 42974534 - 42974463
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaa 97  Q
    ||||||||||||| || ||||||  |||| ||||||||||||||||||  ||||| ||||||||| ||||||    
T  42974534 gtggcatgtaccacttatacacccacatacaattgtgacatgtgttcatatggtccccacacacacaaaaaa 42974463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 47480168 - 47480044
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    |||||||||||||||||||||||   ||| ||||||||||||||| ||  ||||  ||||||||| |||||| | |  |||  ||||||| |||||||||    
T  47480168 gtggcatgtaccatttgtacacc-caatacaattgtgacatgtgtccatatggttcccacacaca-aaaaaacttacatttattgtctcttacacactct 47480071  T
Q  126 cacatagtagcgtggtacaatgtgtgtat 154  Q
    ||||| |  | ||||||||||||||||||    
T  47480070 cacatgg--gggtggtacaatgtgtgtat 47480044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 30922782 - 30922709
Alignment:
Q  109 tgtctctcacacactctcacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    |||||||||||||||||||||| |    |||||||||||||||||| || ||||  |||| ||||||| ||||||||    
T  30922782 tgtctctcacacactctcacatgga---gtggtacaatgtgtgtatggaaaaaagtatgtacatgaaacattatcct 30922709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 11904879 - 11905035
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||| ||||| |||||||||  |||||||||||||||||||| || |||||| | || |||| || ||| ||||||||||||||||||| |||||||    
T  11904879 gtggcatataccacttgtacacccacatataattgtgacatgtgtccatgtggtccctactcacacaagaaactcatcttttgtgtctctcaaacactct 11904978  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    ||||| | |  |||||||||||||||||||||||||| | ||| ||||||| |||||||    
T  11904979 cacatggaa--gtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 11905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 35200596 - 35200739
Alignment:
Q  40 ttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagtagcgtg 139  Q
    |||||||||  |||||||||||||||||||| || | |||| | ||||| | || ||| ||||||||||||||||||| |||||||||||| | |  |||    
T  35200596 ttgtacacccacatataattgtgacatgtgtccatgcggtccctacacatacaagaaactcatcttttgtgtctctcaaacactctcacatggaa--gtg 35200693  T
Q  140 gtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    ||||||||||||||||||||||| | ||| ||| ||| ||||||||    
T  35200694 gtacaatgtgtgtatagagaaaagggtgttcatcaaacattatcct 35200739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 10592010 - 10592129
Alignment:
Q  34 taccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagt 133  Q
    ||||| |||||||||  |||||||||||||||||||| || |||||||| ||||||| || ||| ||||||||||||||||||| |||||||  ||||      
T  10592010 taccacttgtacacccacatataattgtgacatgtgtccatgtggtctctacacacacaagaaactcatcttttgtgtctctcaaacactct--catatg 10592107  T
Q  134 agcgtggtacaatgtgtgtata 155  Q
    |  |||||||||||||||||||    
T  10592108 aaagtggtacaatgtgtgtata 10592129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 41075749 - 41075595
Alignment:
Q  30 catgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaat--tcatcttttgtgtctctcacacactctca 127  Q
    ||||||||| |||||||||  |||| |||||||||||||||||| |||||| ||||| | | ||||||   |||  |||||||||| |||||||||||||    
T  41075749 catgtaccacttgtacacccacatacaattgtgacatgtgttcatgtggtccccacaaaaaaaaaaaaaactcacattttgtgtctttcacacactctca 41075650  T
Q  128 catagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    |||  ||  |||||||||||||||||| ||||||| | |||| | |||| ||||||||    
T  41075649 catgata--gtggtacaatgtgtgtat-gagaaaatggtgtctacgaaacattatcct 41075595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 8368527 - 8368371
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||||||||| |||||||||  || | ||||||||||||||| ||||||||| ||| ||| | |||||| |||  |||| |||||||||||||||||    
T  8368527 gtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccacgtggtccccatacaaaaaaaaaaatcactttttttgtctctcacacactct 8368428  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
     || ||   | |||| ||| ||||||||| ||||||||  |||| |||||| ||||||||    
T  8368427 tac-ta--tgggtggcacattgtgtgtatggagaaaaatgtgtcaatgaaacattatcct 8368371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 31774754 - 31774879
Alignment:
Q  30 catgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccac---acacataaaaaattcatcttttgtgtctctcacacactctc 126  Q
    ||||||||| ||||||||   |||| |||||||||||||||||| |||||| ||||   | | | |||||| |||  |||||||||| ||||||||||||    
T  31774754 catgtaccacttgtacactcacatacaattgtgacatgtgttcatgtggtccccacaaaaaaaaaaaaaaactcacattttgtgtctttcacacactctc 31774853  T
Q  127 acatagtagcgtggtacaatgtgtgtat 154  Q
    ||||  ||  ||||||||||||||||||    
T  31774854 acatgata--gtggtacaatgtgtgtat 31774879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 184
Target Start/End: Complemental strand, 5749155 - 5749029
Alignment:
Q  54 ataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagtagcgtggtacaatgtgtgta 153  Q
    |||||| |||||||||| || ||| || ||||||||| ||||| || |  |||  |||||||||||||||||||||| |    |||||| ||||| ||||    
T  5749155 ataattatgacatgtgtccatgtgatccccacacacaaaaaaactt-acatttattgtctctcacacactctcacatggg---gtggtataatgtatgta 5749060  T
Q  154 tagagaaaaagatgtccatgaaatattatcc 184  Q
    |  | |||||||||| |||||||||||||||    
T  5749059 tgaaaaaaaagatgtacatgaaatattatcc 5749029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 42110569 - 42110616
Alignment:
Q  138 tggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    ||||||| | |||||||||||||||||||||| |||||| ||||||||    
T  42110569 tggtacactctgtgtatagagaaaaagatgtcaatgaaacattatcct 42110616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 130
Target Start/End: Original strand, 27497198 - 27497302
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||||||||| ||||||| |  || | ||||| |||||||||||| ||||| |||| ||||| |||||| |||  | |  |||||| ||||||||||    
T  27497198 gtggcatgtaccacttgtacatccacagacaattgcgacatgtgttcatgtggtttccatacacacaaaaaactcacatatattgtctcacacacactct 27497297  T
Q  126 cacat 130  Q
     ||||    
T  27497298 aacat 27497302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 43100356 - 43100208
Alignment:
Q  34 taccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagt 133  Q
    ||||| |||||||||  |||||||||||||||||||| || |||||||| ||||||| || ||||||||||||||||||||||| ||||| ||||||       
T  43100356 taccacttgtacacccacatataattgtgacatgtgtccatgtggtctctacacacacaagaaattcatcttttgtgtctctcaaacactatcacat--g 43100259  T
Q  134 agcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    |  |||||||||||||||||||||||||| | ||| ||||||| |||||||    
T  43100258 aaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 43100208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 12248299 - 12248456
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||| ||||| ||||||| |  |||||||||||||||||||| || |||||| | |||| || || ||| ||||||||||||||||||| ||||| |    
T  12248299 gtggcatataccacttgtacatccacatataattgtgacatgtgtccatgtggtccctacacgcacaagaaactcatcttttgtgtctctcaaacactat 12248398  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    ||||| | |  |||||||||||||||||||||||||| | ||| ||||||| ||||||||    
T  12248399 cacatggaa--gtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcct 12248456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 33687673 - 33687829
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||| ||||| ||||||| |   ||||||||||||||||||| || ||| |||| ||||||| || ||| ||||||||||||||||||| |||||||    
T  33687673 gtggcatataccacttgtacatccatatataattgtgacatgtgtccatgtgatctctacacacacaagaaactcatcttttgtgtctctcaaacactct 33687772  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    || |||  |  |||||||||| ||| ||||||||||| |  || ||||||| |||||||    
T  33687773 cagata--aaagtggtacaatatgtatatagagaaaagggagttcatgaaacattatcc 33687829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 8076307 - 8076438
Alignment:
Q  52 atataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagtagcgtggtacaatgtgtg 151  Q
    |||||||||||||||| ||  | |||||  | ||||||| || ||||| ||||||||||||||||| |||||||||||| | |  |||||||||||| ||    
T  8076307 atataattgtgacatgcgtctatgtggttcctacacacacaagaaatttatcttttgtgtctctcaaacactctcacatggaa--gtggtacaatgtatg 8076404  T
Q  152 tatagagaaaaagatgtccatgaaatattatcct 185  Q
    ||||||||||| | ||| ||||||| ||||||||    
T  8076405 tatagagaaaagggtgttcatgaaacattatcct 8076438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 20151484 - 20151557
Alignment:
Q  109 tgtctctcacacactctcacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    |||||||||||||||||||||| |    |||||| ||||| ||||| || |||||| ||| ||||||||||||||||    
T  20151484 tgtctctcacacactctcacatggg---gtggtataatgtatgtatggaaaaaaaggtgtacatgaaatattatcct 20151557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 47571705 - 47571561
Alignment:
Q  40 ttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagtagcgtg 139  Q
    |||||||||  |||||||||||||||||||| || |||||| | |||||||||| ||| ||||||||||||||||||| |||||||||||| | |  |||    
T  47571705 ttgtacacccacatataattgtgacatgtgtccatgtggtccctacacacataagaaactcatcttttgtgtctctcaaacactctcacatggaa--gtg 47571608  T
Q  140 gtacaatgtgtgtatagagaaaaagatgtccatgaaatattatccta 186  Q
    ||||||||||||||||||| ||| | ||| ||||||| |||||||||    
T  47571607 gtacaatgtgtgtatagaggaaagggtgttcatgaaacattatccta 47571561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 29731214 - 29731369
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||| ||||| | |||||||  |||||||||||||||||||| || |||||| | ||||||| || ||||||||||||||||||||||| |||||||    
T  29731214 gtggcatataccactagtacacccacatataattgtgacatgtgtccatgtggtccctacacacacaagaaattcatcttttgtgtctctcaaacactct 29731313  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatc 183  Q
    ||||| | |  ||| |||||||||||||||||||||| | ||| ||||||| ||||||    
T  29731314 cacatggaa--gtgatacaatgtgtgtatagagaaaagggtgttcatgaaacattatc 29731369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 33502676 - 33502524
Alignment:
Q  30 catgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcaca 129  Q
    ||||||||| |||||||||| |||  ||||||||||| ||||||| ||||||||||||||| |||||| |||  |||| | ||| |||||||||||||||    
T  33502676 catgtaccacttgtacacctacatgcaattgtgacatatgttcacatggtctccacacacacaaaaaactcacattttatatctttcacacactctcaca 33502577  T
Q  130 tagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    ||| || |||||||||||| ||||   |||||| ||||| ||||||| |||||||    
T  33502576 tag-ag-gtggtacaatgtatgtacgaagaaaaggatgttcatgaaacattatcc 33502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 48489475 - 48489630
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||| ||||| ||||||| |   ||||||||||||||| ||| || |||||| | || |||| || ||| ||||||||||||||||||| ||||| |    
T  48489475 gtggcatataccacttgtacatccatatataattgtgacatctgtccatgtggtccctacgcacacaagaaactcatcttttgtgtctctcaaacactat 48489574  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatc 183  Q
    ||||| | |  |||||||||||| ||||||||||||| | ||| ||||||| ||||||    
T  48489575 cacatggaa--gtggtacaatgtatgtatagagaaaatggtgttcatgaaacattatc 48489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 26040996 - 26041067
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaa 97  Q
    ||||||||||||| |||||||||  |||| ||||||||||||||| ||||||||| ||||||||| ||||||    
T  26040996 gtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccacgtggtccccacacacaaaaaaaa 26041067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 19989273 - 19989419
Alignment:
Q  34 taccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagt 133  Q
    ||||| ||||||| |  |||| || |||||||||||| || ||||| ||||||  ||||||||| | |  |||||||||||||||||||||||||||       
T  19989273 taccacttgtacatccacatacaagtgtgacatgtgtccatgtggtttccaca--cataaaaaacttacattttgtgtctctcacacactctcacat--g 19989368  T
Q  134 agcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    || |||||||||||||||||| |||||||   |||| |||||| ||||||||    
T  19989369 agagtggtacaatgtgtgtat-gagaaaagagtgtctatgaaacattatcct 19989419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 7178263 - 7178198
Alignment:
Q  30 catgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaa 95  Q
    |||||||||||||||||||  |||| |||||||||| ||||  | |||||||| ||||||| ||||    
T  7178263 catgtaccatttgtacacccacatacaattgtgacaagtgtctatgtggtctcgacacacaaaaaa 7178198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 12907676 - 12907635
Alignment:
Q  56 aattgtgacatgtgttcacgtggtctccacacacataaaaaa 97  Q
    |||||||||||||||| | |||||| ||||||||||||||||    
T  12907676 aattgtgacatgtgtttatgtggtccccacacacataaaaaa 12907635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 15225147 - 15225039
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacata--aaaaattcatcttttgtgtctctcacacact 123  Q
    ||||||||||| | || ||||||  |||  ||||||||||| ||| ||| ||||| ||||||||| |  ||||| |||  |||| | |||||||||||||    
T  15225147 gtggcatgtacaacttatacacccacatgcaattgtgacatatgtccacatggtccccacacacacacaaaaaactcacattttatatctctcacacact 15225048  T
Q  124 ctcacatag 132  Q
    |||||||||    
T  15225047 ctcacatag 15225039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 6487754 - 6487814
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccaca 86  Q
    ||||||||||||| ||||||| |  || | ||||||||||||||| ||||||||| |||||    
T  6487754 gtggcatgtaccacttgtacatccacacacaattgtgacatgtgtccacgtggtccccaca 6487814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 40216443 - 40216593
Alignment:
Q  34 taccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagt 133  Q
    ||||| |||||||||  |||||||||||||||||||| || |||||| | |||||||||| ||| ||||||||| ||||||||| |||||||||||| |     
T  40216443 taccacttgtacacccacatataattgtgacatgtgtccatgtggtccctacacacataagaaactcatcttttatgtctctcaaacactctcacatgga 40216542  T
Q  134 agcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatccta 186  Q
    |  |||||||||||||||||||||| ||| | ||| ||||||| |||||||||    
T  40216543 a--gtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatccta 40216593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 7708546 - 7708496
Alignment:
Q  185 tagacaagtatacgtaggttggttattttagtcccaaaaagggtcaagtag 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7708546 tagacaagtatacgtaggttggttattttagtcccaaaaagggtcaagtag 7708496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 7708357 - 7708301
Alignment:
Q  336 gcacatgtatgagtctttaattattattatcttttgatagggtctttatttagtata 392  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  7708357 gcacatgtatgagtctttaattattattatcttttgacggggtctttatttattata 7708301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 33300004 - 33300069
Alignment:
Q  25 agtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacaca 90  Q
    ||||||||||||||||| ||||||   ||| |||||||||||||||||| |||||| |||||||||    
T  33300004 agtggcatgtaccatttatacacccatatacaattgtgacatgtgttcatgtggtccccacacaca 33300069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 48525352 - 48525508
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||| ||||| ||||||| |  ||||||||||||||||||||||| ||| || | |||||||||| ||| | ||||||||||||||||| |||||||    
T  48525352 gtggcatataccacttgtacatccacatataattgtgacatgtgttcatgtgttccctacacacataagaaacttatcttttgtgtctctcaaacactct 48525451  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    ||||| | |  |||||||||||||||||||||| ||| | ||| ||||||| |||||||    
T  48525452 cacatggaa--gtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 48525508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 25784064 - 25783908
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactct 125  Q
    ||||||||||||| ||||||| |  || ||||||||||||||| |||| || ||| ||||| ||| |||||| |||  |||  ||| || ||||||||||    
T  25784064 gtggcatgtaccacttgtacatccacacataattgtgacatgtattcatgtagtccccacatacacaaaaaactcacttttattgtttcacacacactct 25783965  T
Q  126 cacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    ||||||| |   |||||||| ||||||||||| |||||||||| ||||||| ||||||||    
T  25783964 cacatagga---tggtacaacgtgtgtatagaaaaaaagatgttcatgaaacattatcct 25783908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 41277245 - 41277399
Alignment:
Q  30 catgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacac---ataaaaaattcatcttttgtgtctctcacacactctc 126  Q
    |||||||||  ||||||||  |||| |||||||||||||||||| |||||| ||||||||   | |||||| ||| ||||||||||||||||||| ||||    
T  41277245 catgtaccacctgtacacccacatacaattgtgacatgtgttcatgtggtccccacacacacaaaaaaaaactcaccttttgtgtctctcacacagtctc 41277344  T
Q  127 acatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    ||||  ||  |||||||||||||||||| ||||||| | |||| | |||| |||||||    
T  41277345 acatgata--gtggtacaatgtgtgtat-gagaaaatggtgtctacgaaacattatcc 41277399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 5817536 - 5817380
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacaca-taaaaaattcatcttttgtgtctctcacacactc 124  Q
    ||||||||||||| |||||||||  || | ||||||||||||||| || |||||| |||||||||  |||||| |||| |||  ||||||  |||||||     
T  5817536 gtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccatgtggtccccacacacaccaaaaaactcatatttattgtctcctacacactt 5817437  T
Q  125 tcacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    | |||   | | |||||||||||||||||| ||||||| ||||| ||||||| |||||||    
T  5817436 ttaca---tggggtggtacaatgtgtgtatggagaaaaggatgtacatgaaacattatcc 5817380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 14150043 - 14149959
Alignment:
Q  99 tcatcttttgtgtctctcacacactctcacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    ||||||||||||||||||| ||||| |||||| | ||  ||||||||||||||||||||||||| | ||| ||||||| ||||||||    
T  14150043 tcatcttttgtgtctctcaaacactttcacatggaag--tggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcct 14149959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 40947233 - 40947158
Alignment:
Q  52 atataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctca 127  Q
    |||||||||| |||||||| |||||||||   ||||||| ||||||||||| |||| |||||||||||||||||||    
T  40947233 atataattgtaacatgtgtccacgtggtccatacacacacaaaaaattcatattttatgtctctcacacactctca 40947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 45996050 - 45995895
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctcc-acacacataaaaaattcatcttttgtgtctctcacacactc 124  Q
    ||||||||||||| |||||||||  || | |||| ||||| ||||||  ||||||||| ||||||| |||||| |||  | |  ||||||||||||||||    
T  45996050 gtggcatgtaccacttgtacacccacacacaattttgacaagtgttcttgtggtctcccacacaca-aaaaaactcacatgtattgtctctcacacactc 45995952  T
Q  125 tcacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcc 184  Q
    |||||| |    |||||||||||||||||| || |||||  ||| ||||||| |||||||    
T  45995951 tcacatgga---gtggtacaatgtgtgtatggaaaaaaatgtgtacatgaaacattatcc 45995895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 24059288 - 24059217
Alignment:
Q  27 tggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaat 98  Q
    ||||||||| ||||||||||||  |||| ||||||||||||||| || |||||  ||||||||| |||||||    
T  24059288 tggcatgtatcatttgtacacccacatacaattgtgacatgtgtccatgtggttcccacacacaaaaaaaat 24059217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 51579346 - 51579417
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaa 97  Q
    ||||||||||||| |||||||||  |||| ||||||||||||||| || |||||  ||||||| | ||||||    
T  51579346 gtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccatgtggttcccacacatacaaaaaa 51579417  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 39631082 - 39631009
Alignment:
Q  109 tgtctctcacacactctcacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    |||||||||||||||||||||   ||| |||||||||||||| ||| || ||||  |||| ||||||| ||||||||    
T  39631082 tgtctctcacacactctcaca---tagagtggtacaatgtgtatatggaaaaaagtatgtacatgaaacattatcct 39631009  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 46135554 - 46135709
Alignment:
Q  27 tggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctc 126  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| | | ||||  ||| | ||| |||||| ||||  ||| | ||||||||||||||||    
T  46135554 tggcatgtatcatttgtacacctacatacaattgtgacatgtgtccgcatggttcccatatacacaaaaaactcat--tttatatctctcacacactctc 46135651  T
Q  127 acatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatccta 186  Q
    ||||||  | |||||||||||||||||| ||||||| ||||| ||||||| |||||||||    
T  46135652 acatag--gggtggtacaatgtgtgtatggagaaaatgatgttcatgaaacattatccta 46135709  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 36674667 - 36674527
Alignment:
Q  34 taccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagt 133  Q
    ||||| ||||||||   |||||||||||||||||||| || ||| || | |||||||||| ||| ||||||||| ||||||||| ||||||||| || |     
T  36674667 taccacttgtacactcacatataattgtgacatgtgtccatgtgatcactacacacataagaaactcatcttttatgtctctcaaacactctcatatgga 36674568  T
Q  134 agcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaa 176  Q
    |  |||||||||||||||||||||||||| ||||| |||||||    
T  36674567 a--gtggtacaatgtgtgtatagagaaaaggatgttcatgaaa 36674527  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 23004782 - 23004852
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaaa 96  Q
    ||||||||||||| |||||||||  || | ||||||||||||| |||| |||||| |||||||||||||||    
T  23004782 gtggcatgtaccacttgtacacccacacacaattgtgacatgtattcatgtggtccccacacacataaaaa 23004852  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 12748237 - 12748395
Alignment:
Q  26 gtggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggt--ctccacacacataaaaaattcatcttttgtgtctctcacacact 123  Q
    ||||||| ||||| |||||||||  |||||||||||||||| ||| || |||||  || |||||||| ||||||| |||||||||||||||||| |||||    
T  12748237 gtggcatataccacttgtacacccacatataattgtgacatctgtccatgtggttcctacacacacacaaaaaat-catcttttgtgtctctcaaacact 12748335  T
Q  124 ctcacatagtagcgtggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    ||||||| | |  ||||||||||||||||||| |||||| | |||  |||||| ||||||||    
T  12748336 ctcacatggaa--gtggtacaatgtgtgtataaagaaaagggtgtttatgaaacattatcct 12748395  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 16718058 - 16718179
Alignment:
Q  61 tgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagtagcgtggtacaatgtgtgtatagagaa 160  Q
    |||||||||| ||  ||||| | ||||||| || ||| ||||||||||||||||||| ||||| |||||| | ||  |||||||||||||||||||||||    
T  16718058 tgacatgtgtccatttggtccctacacacacaagaaactcatcttttgtgtctctcaaacactatcacatggaag--tggtacaatgtgtgtatagagaa 16718155  T
Q  161 aaagatgtccatgaaatattatcc 184  Q
    || | ||| ||||||| |||||||    
T  16718156 aagggtgttcatgaaacattatcc 16718179  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 172
Target Start/End: Original strand, 32720411 - 32720529
Alignment:
Q  52 atataattgtgacatgtgttcacgtggtctccacacacataaaaaattcatcttttgtgtctctcacacactctcacatagtagcgtggtacaatgtgtg 151  Q
    |||||||| |||||| |||  ||||| ||  |||||||||| |||||||| ||||||||||||||||| ||| ||| ||||  | |||||| ||||||||    
T  32720411 atataattatgacatttgtctacgtgatcctcacacacatacaaaattcaccttttgtgtctctcacatactttcaaatag--gagtggtataatgtgtg 32720508  T
Q  152 tatagagaaaaagatgtccat 172  Q
    ||| || |||||| |||||||    
T  32720509 tatggaaaaaaaggtgtccat 32720529  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 29429600 - 29429679
Alignment:
Q  17 actaccttag-tggcatgtaccatttgtacacctgcatataattgtgacatgtgttcacgtggtctccacacacataaaa 95  Q
    |||||||||| |||||||||||| |||||||||  |||| ||||||||||||||| ||| ||||| || |||||| ||||    
T  29429600 actaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccacatggtcccctcacacaaaaaa 29429679  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 9521858 - 9521811
Alignment:
Q  138 tggtacaatgtgtgtatagagaaaaagatgtccatgaaatattatcct 185  Q
    ||||||||||||||||| ||||||| ||||| ||||||| ||||||||    
T  9521858 tggtacaatgtgtgtatggagaaaaggatgtacatgaaacattatcct 9521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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