View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_high_10 (Length: 677)
Name: NF19929_high_10
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Original strand, 40959637 - 40960211
Alignment:
| Q |
18 |
ttactaaccggagaaaacgtcatttcacccggtgaggagtgtgacaaactattttcagctatgtgtcagggaaaaatcatcgatcctcttcttgaatgtt |
117 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
40959637 |
ttactaactggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgct |
40959736 |
T |
|
| Q |
118 |
tgggagagtggaacggtgctcctcttcctatttgttaactttgttggttacttttgaagatgctttatttgttgtattttatacaagtgtatcaaaaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||| ||||||||| | |||||||||||| ||| |||| |
|
|
| T |
40959737 |
tgggagagtggaacggtgctcctcttccaatttgttaactttgttggttaattctgaaaatgttttatttgta----tctatacaagtgtaacaataatc |
40959832 |
T |
|
| Q |
218 |
attaggtttttcatgcctttaattaatattgaaaatttcatttcaattttctgcaatattaatgtcaaacttctaatttacttttatggtattgctaatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40959833 |
attaggtttttcatgcctttaattaatattgaaaatttcatttaaattttctgcaatattaatgtcaaacttctaatttacttttatggtattgctaatg |
40959932 |
T |
|
| Q |
318 |
tgtgtcctaaggagacttatttannnnnnnggttaccatattatcgatatgaagttttcatacgcaagagtcagagatcgaacctctgattacttgttta |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40959933 |
tgtgtcctaaggagacttatttatttttttggttaccatattatcgatatgaagttttcatatgcaagagtcagagatcgaacctctgattacttgctta |
40960032 |
T |
|
| Q |
418 |
tggggttcaaatatcttaccactttgatcaatctattgttggaaagtataatttttaaaaatttagtggtattgaagtcacttttcaaaacaatagtttc |
517 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40960033 |
tggggttcaaatatcttaccacttagatcaatctattgttggaaagtataattttt-taaatttagaggtattgaagtcacttttcaaaacaatagtttc |
40960131 |
T |
|
| Q |
518 |
acatttaatttcttaaggcataatattagaattttcctacttttggaacatactttcatttattcgtcggagcctttagt |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40960132 |
acatttaatttcttaaggcataatattagaattttcctacttttggaacatactttcatttgttcgtcggagcctttagt |
40960211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 40945672 - 40945894
Alignment:
| Q |
18 |
ttactaaccggagaaaacgtcatttcacccggtgaggagtgtgacaaactattttcagctatgtgtcagggaaaaatcatcgatcctcttcttgaatgtt |
117 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
40945672 |
ttactaactggagaaaatgtcatttcacccggtgaagtgtgtgacaaattattcacagctatgtgtcagggaaaaatcattgatcctcttcttgaatgct |
40945771 |
T |
|
| Q |
118 |
tgggagagtggaacggtgctcctcttcctatttgttaactttgttggttacttttgaagatgctttatttgttgtattttatacaagtgtatcaaaaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40945772 |
tgggagagtggaacggtgctcctcttccaatttgttaactttgttggttaattatgaaaatgctttatttgttgtattttatacaagtgtatcaaaaatc |
40945871 |
T |
|
| Q |
218 |
at-taggtttttcatgcctttaa |
239 |
Q |
| |
|
|| ||||||||||| |||||||| |
|
|
| T |
40945872 |
atgtaggtttttcaagcctttaa |
40945894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 597 - 671
Target Start/End: Original strand, 40960275 - 40960351
Alignment:
| Q |
597 |
tcccttgtgctaccattgatgtttctctgtttccgtaataagactt--tatagtcttcatcaggccggtccctttgc |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40960275 |
tcccttgtgctaccattgatgtttctctgtttccgtaataagactttatatagtcttcatcaggccggtccctttgc |
40960351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 155
Target Start/End: Complemental strand, 28183692 - 28183610
Alignment:
| Q |
73 |
cagctatgtgtcagggaaaaatcatcgatcctcttcttgaatgtttgggagagtggaacggtgctcctcttcctatttgttaa |
155 |
Q |
| |
|
|||||||||| || || ||||| | ||||||||| | |||||| | |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
28183692 |
cagctatgtgccaaggtaaaattgttgatcctcttatggaatgtctcggagagtggaacggcgctcctcttccaatttgttaa |
28183610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University