View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_102 (Length: 238)
Name: NF19929_high_102
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_102 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: scaffold0256 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11524 - 11746
Alignment:
| Q |
1 |
ctcaattgaatatgatgattcaaatcaaagaaaacttaataattgaagacta--agaatcgaagacagagtgagattgttagaagatgctaaaaatgaat |
98 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11524 |
ctcaattgaatatgatgattcaaatgaaagaaaacttaataattgaagactataagaatcgaagacag--tgagattgttagaagatgctaaaaatgaat |
11621 |
T |
|
| Q |
99 |
ctgtaaatttacaattttca-caaaacatataaaggatttaggaagggtactacagaatgtttctaaagatattaggcattgattaatccaaaggaacaa |
197 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| |
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| T |
11622 |
ctgtaaatttacaattttcatcaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaatcaagcattgattaatccaaaggaacaa |
11721 |
T |
|
| Q |
198 |
ggtgttcaagcatttgtgatgttta |
222 |
Q |
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||||||||||| ||||||||||||| |
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| T |
11722 |
ggtgttcaagcctttgtgatgttta |
11746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16572234 - 16572010
Alignment:
| Q |
1 |
ctcaattgaatatgatgattcaaatcaaagaaaacttaataattgaagacta--agaatcgaagacagagtgagattgttagaagatgctaaaaatgaat |
98 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
16572234 |
ctcaattgaatatgatgattcaaatgaaagaaaacttaataattgaagactataagaatcgaagacagagtgagattattagaagatgcaaaaaatgaat |
16572135 |
T |
|
| Q |
99 |
ctgtaaatttacaattttca-caaaacatataaaggatttaggaagggtactacagaatgtttctaaagatattaggcattgattaatccaaaggaacaa |
197 |
Q |
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|||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |
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| T |
16572134 |
ctgtaaatttacaattttcaacaaagcatgtaaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaacgaacaa |
16572035 |
T |
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| Q |
198 |
ggtgttcaagcatttgtgatgttta |
222 |
Q |
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|||||||| || ||||||||||||| |
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| T |
16572034 |
ggtgttcatgcctttgtgatgttta |
16572010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 16874056 - 16873865
Alignment:
| Q |
1 |
ctcaattgaatatgatgattcaaatcaaagaaaacttaataattgaagacta--agaatcgaagacagagtgagattgttagaagatgctaaaaatgaat |
98 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||| |
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| T |
16874056 |
ctcaattgaatatgatgattcaaatgaaagaaaacttgagaattgaagactataagaattgaagacagagtgagattgttagatgatgcaaaaaatgaat |
16873957 |
T |
|
| Q |
99 |
ctgtaaatttacaattttcacaaaacatataaaggatttaggaagggtactacagaatgtttctaaagatattaggcattgattaatccaaa |
190 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
16873956 |
ctgtaaatttacaattttcacaaagcatataaaggatttaggaagggtactacagaatgtttctaaagaaattaagcattgattaatccaaa |
16873865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 16580196 - 16580005
Alignment:
| Q |
1 |
ctcaattgaatatgatgattcaaatcaaagaaaacttaataattgaagact--aagaatcgaagacagagtgagattgttagaagatgctaaaaatgaat |
98 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16580196 |
ctcaagtgaatatgatgattcaaatgaaagaaaacataataattgaggactgtaagaatcgaagacagagtgagattgttagaagatgcataaaatgaat |
16580097 |
T |
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| Q |
99 |
ctgtaaatttacaattttc-acaaaacatataaaggatttaggaagggtactacagaatgtttctaaagatattaggcattgattaatccaa |
189 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
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| T |
16580096 |
atgtaaatttacaattttcaacaaagcaaataaaggatttaggaagggtactacagaatgtttctaaataaattaatcattgattaatccaa |
16580005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 16615184 - 16615375
Alignment:
| Q |
1 |
ctcaattgaatatgatgattcaaatcaaagaaaacttaataattgaagact--aagaatcgaagacagagtgagattgttagaagatgctaaaaatgaat |
98 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16615184 |
ctcaagtgaatatgatgattcaaatgaaagaaaacataataattgaggactgtaagaatcgaagacagagtgagattgttagaagatgcataaaatgaat |
16615283 |
T |
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| Q |
99 |
ctgtaaatttacaattttc-acaaaacatataaaggatttaggaagggtactacagaatgtttctaaagatattaggcattgattaatccaa |
189 |
Q |
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|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
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| T |
16615284 |
atgtaaatttacaattttcaacaaagcaaataaaggatttaggaagggtactacagaatgtttctaaataaattaatcattgattaatccaa |
16615375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 16783416 - 16783533
Alignment:
| Q |
71 |
agattgttagaagatgctaaaaatgaatctgtaaatttacaattttca-caaaacatataaaggatttaggaagggtactacagaatgtttctaaagata |
169 |
Q |
| |
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|||||||||| |||| | ||||| ||||||| |||||||||||||||| |||| || |||| | ||||||||||| |||||||||||||||||| ||| | |
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| T |
16783416 |
agattgttagcagatacaaaaaaggaatctgcaaatttacaattttcatcaaatcaaataatg-atttaggaaggatactacagaatgtttctagagaaa |
16783514 |
T |
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| Q |
170 |
ttaggcattgattaatcca |
188 |
Q |
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| | ||||||||||||||| |
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| T |
16783515 |
taaagcattgattaatcca |
16783533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 16977915 - 16978013
Alignment:
| Q |
60 |
aagacagagtgagattgttagaagatgctaaaaatgaatctgtaaatttacaattttc-acaaaacatataaaggatttaggaagggtactacagaatg |
157 |
Q |
| |
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|||||| ||||| |||| |||||||| | ||||||||||||| |||||| |||||||| ||||| |||| ||||||||| |||||| ||||||| |||| |
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| T |
16977915 |
aagacaaagtgatattgctagaagatacaaaaaatgaatctgcaaattttcaattttcaacaaatcatacaaaggatttcggaaggatactacaaaatg |
16978013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 32792574 - 32792500
Alignment:
| Q |
69 |
tgagattgttagaagatgctaaaaatgaatctgtaaatttacaattttc-acaaaacatataaaggatttaggaa |
142 |
Q |
| |
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|||||||| |||||||| | ||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||| |
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| T |
32792574 |
tgagattgctagaagatacaaaaaatgaatctgcaaatttacaatattcaacaaatcatataaaggatttaggaa |
32792500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 14536039 - 14535925
Alignment:
| Q |
41 |
aattgaagacta--agaatcgaagacagagtgagattgttagaagatgctaaaaatgaatctgtaaatttacaattttcacaaaacatataaaggattta |
138 |
Q |
| |
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|||||||||||| || ||| |||||| ||||||||||| |||||||| |||| |||| || || |||||||||| ||||| ||||||||||||| | |
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| T |
14536039 |
aattgaagactagaagcatccaagacaaagtgagattgtgtgaagatgcaaaaattgaaact--aagtttacaatttcaacaaatcatataaaggattca |
14535942 |
T |
|
| Q |
139 |
ggaagggtactacagaa |
155 |
Q |
| |
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|||||| |||||||||| |
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| T |
14535941 |
ggaaggatactacagaa |
14535925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 21628849 - 21628765
Alignment:
| Q |
60 |
aagacagagtgagattgttagaagatgctaaaaatgaatctgtaaatttacaattttc-acaaaacatat-aaaggatttaggaa |
142 |
Q |
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|||||| |||||||||| | |||||| |||||||||||| ||||||||||| ||| ||||| ||||| |||||||||||||| |
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| T |
21628849 |
aagacaaagtgagattgctggaagatataaaaaatgaatctacaaatttacaatattcaacaaatcatataaaaggatttaggaa |
21628765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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