View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_104 (Length: 234)
Name: NF19929_high_104
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_104 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 10253814 - 10254048
Alignment:
| Q |
9 |
agcagagaaccagtttccccaaatccatctaaacaaaacatatgcttcaaattattgtggccctgttgactcaaatggacagtgtaaccgtcacagttgc |
108 |
Q |
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| T |
10253814 |
agcagagaaccagtttccccaaatccatctagacaaaacatatgcttcaaattattgtggccctgttgactcaaatggactgtgtaaccgtcacagttgc |
10253913 |
T |
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| Q |
109 |
aatcaatactcttgaggataaactttgaaggatagagattaatttggtcatgaatatataacttgagccgtctaatataac---------ataatgcaga |
199 |
Q |
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| T |
10253914 |
aatcaatactcttgaggataaactttgaaggatagagattaatttggtcatgaatatataacttgagccgtctaatataacataatattaataatgcaga |
10254013 |
T |
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| Q |
200 |
ttactccaactatatgaccgcaggaatatttgtat |
234 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
10254014 |
ttactccaaccatatgaccgcaggaatatttgtat |
10254048 |
T |
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