View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_108 (Length: 230)
Name: NF19929_high_108
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_108 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 45094615 - 45094807
Alignment:
| Q |
1 |
aaggaagagaagaaagctacacaagaaccctacatgaactctagcttacttgaagtacaagttacttaatatagcttagcttactaattgagattagcat |
100 |
Q |
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| T |
45094615 |
aaggaagagaagaaagctacacaagaaccctacatgaactctagcttacttgaagtacaagttacttaatatagcttagcttactaattgagattagcat |
45094714 |
T |
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| Q |
101 |
gtaattaggagctttgtattcatataaatactttatgtacttgcttttccatctatgaaaaatgagagtttattcattttacactttccataa |
193 |
Q |
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| T |
45094715 |
gtaattaggagctttgtattcatataaatactttatgtacttgcttttccatctatgaaaaatgagagtttattcattttacactttccataa |
45094807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 12298686 - 12298816
Alignment:
| Q |
46 |
ttacttgaagtacaagttacttaatatagcttagcttactaattgagattagcatgtaattaggagctttgtattcatataaatactttatgtacttgct |
145 |
Q |
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| T |
12298686 |
ttacttgatgtataagttacttagtatagcttagtttactaattgagattagcatctaattgggagctttgtattcatataaatactccttgtacttgct |
12298785 |
T |
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| Q |
146 |
tttccatctatgaaaaatgagagtttattca |
176 |
Q |
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| T |
12298786 |
tttccatctaggagaaatgagagtttattca |
12298816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 31962830 - 31962934
Alignment:
| Q |
92 |
gattagcatgtaattaggagctttgtattcatataaatactttatgtacttgcttttccatctatgaaaaatgagagtttattcattttacactttccat |
191 |
Q |
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| T |
31962830 |
gattagcatgaaattaggagctttgtatctctataaatactccttgtacttgcttttccatctatgagaaatgagagtttattcattttgcacatttcat |
31962929 |
T |
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| Q |
192 |
aacaa |
196 |
Q |
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||||| |
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| T |
31962930 |
aacaa |
31962934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 180
Target Start/End: Original strand, 31960931 - 31961013
Alignment:
| Q |
98 |
catgtaattaggagctttgtattcatataaatactttatgtacttgcttttccatctatgaaaaatgagagtttattcatttt |
180 |
Q |
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| T |
31960931 |
catgtaattaggagccttgtatctctataaatactccttgtacttgcttttccatctatgagaaatgagagtttattcatttt |
31961013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 28557780 - 28557926
Alignment:
| Q |
46 |
ttacttgaagtacaagttacttaatatagcttagcttactaattgagattagcatgtaattaggagctttgtattcatataaatactttatgtacttgct |
145 |
Q |
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| T |
28557780 |
ttacttgatgtacaagttactatgtttagcttag-ttaataattgagattagcatgtaattaggagctttgtacactaataaatactccatgtacttgtt |
28557878 |
T |
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| Q |
146 |
tttccatctatgaaaaatgagagtttattcattttacactttccataa |
193 |
Q |
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| T |
28557879 |
aattcatctgtgagacatgagagcttatccattttacacatttcataa |
28557926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 28562511 - 28562624
Alignment:
| Q |
85 |
taattgagattagcatgtaattaggagctttgtattc--atataaatactttatgtacttgcttttccatctatgaaaaatgagagtttattca-tttta |
181 |
Q |
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|||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||| | | |||||||| ||||||||| |||| || ||||| |
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| T |
28562511 |
taattgagattagcatgt-attaggagctttgtataccattataaatactccatgtacttgttaattcatctatgtgaaatgagagcttatccattttta |
28562609 |
T |
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| Q |
182 |
cactttccataacaa |
196 |
Q |
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| T |
28562610 |
cgcattccataacaa |
28562624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 18962469 - 18962352
Alignment:
| Q |
46 |
ttacttgaagtacaagttacttaatatagcttagcttactaattgagattagcatgtaattaggagctttgtattcatataaatactttatgtacttgct |
145 |
Q |
| |
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|||||||| |||||||||||||| ||| ||||| ||| |||||||||||| ||||||||||||||||||||| || |||||||||| |||| ||||| |
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| T |
18962469 |
ttacttgatgtacaagttacttagcataacttag-ttaataattgagattaacatgtaattaggagctttgtactcttataaatactccttgtagttgct |
18962371 |
T |
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| Q |
146 |
tttccatctatgaaaaatg |
164 |
Q |
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| | ||||||||| ||||| |
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| T |
18962370 |
tattcatctatgagaaatg |
18962352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 18962354 - 18962294
Alignment:
| Q |
135 |
atgtacttgcttttccatctatgaaaaatgagagtttattcattttacactttccataaca |
195 |
Q |
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|||||||||||| | ||||||||| |||||||||||| |||||||||||| |||||||||| |
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| T |
18962354 |
atgtacttgcttattcatctatgagaaatgagagtttgttcattttacacattccataaca |
18962294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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