View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_110 (Length: 227)
Name: NF19929_high_110
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_110 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45095260 - 45095034
Alignment:
| Q |
1 |
tagatattaaccactgatgatgtgggtatcaatggttaagatctccacattattccctcaaattttgtttttcaattgagacaacctactcatgttaata |
100 |
Q |
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| T |
45095260 |
tagatattaaccactgatgatgtgggtatcaatggttaagatctccacattattccctcaaattttgtttttcaattgagacaacctactcatgttaata |
45095161 |
T |
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| Q |
101 |
agtttatgggcaattagccacaacattgaattatttccttcaactaagtcgtatgagcaagatattagttggttaagttcataatgtacaaaggaaaagg |
200 |
Q |
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| T |
45095160 |
agtttatgggcaattagccacaacattgaattatttccttcaactaagtcgtatgagcaagatattagttggttaagttcataatgtacaaaggaaaagg |
45095061 |
T |
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| Q |
201 |
tacaaaagttatcgagtgtatgagatt |
227 |
Q |
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| T |
45095060 |
tacaaaagttatcgagtgtatgagatt |
45095034 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 26919517 - 26919571
Alignment:
| Q |
28 |
atcaatggttaagatctccacattattccctcaaattttgtttttcaattgagac |
82 |
Q |
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| T |
26919517 |
atcaatggttaagatctccacaagattccctcaattttttttcttcaattgagac |
26919571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 55696110 - 55696057
Alignment:
| Q |
28 |
atcaatggttaagatctccacattattccctcaaattttgtttttcaattgaga |
81 |
Q |
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||||||||||||||||||| ||||||| |||||| |||| ||| ||||||||| |
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| T |
55696110 |
atcaatggttaagatctcctcattatttcctcaagttttttttcccaattgaga |
55696057 |
T |
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