View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_12 (Length: 666)
Name: NF19929_high_12
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 5 - 588
Target Start/End: Original strand, 1249492 - 1250093
Alignment:
| Q |
5 |
atgtcgaagaatatccaaaaaaggtaactggacaggcagctccactgtcgttgacaatcggtaaacattgctaactgtgtaaccttttccgtagtaagtt |
104 |
Q |
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| T |
1249492 |
atgtcgaataagatccaaaaaaggtaactggacagggagctccactgtctttgacaatcggtaaacattgctaactgtgtaaccttttccgtcgtaagtt |
1249591 |
T |
|
| Q |
105 |
tagtcttttattttcaaaatcggtaaacattgctaactgtataggcatggtttacctatggagtcttccttaaactgtgtgttgtgtgaggggattttgg |
204 |
Q |
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| T |
1249592 |
ttgtcttttattttcaaaatcggtaaacattgctaactgtataggcatggtttacctctggagtcttccttaaactgtgtgttgtgtgaggggattttgg |
1249691 |
T |
|
| Q |
205 |
aaccgacaaaccatttgcttcttcgctgtgtgtttgctaaaggggtgtgggatggtttatttaagggctaccggttaatttagcatgcggcagtgtggag |
304 |
Q |
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| T |
1249692 |
aaccgacaaaccatttgcttcttcgctgtgtgtttgctaaagtggtgtgggatggtttatttaagggctaccggttaatttagcatgcggcagtgtggag |
1249791 |
T |
|
| Q |
305 |
catttggagggcgagaagcgaccgcatcttcaataattcagttcgcgaggtggaggagattgtggaaactaaggttttgtcctggatggaccttgactcg |
404 |
Q |
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| T |
1249792 |
catttggagggcgagaagcgaccgcatcttcaataattcagttcgcgaggtggaggagattgtggaaactaaggttttgtcctggacggaccttgactcg |
1249891 |
T |
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| Q |
405 |
gttgaaggtaccggcttgtatgttttatgattggggttggaacccgggagattgtctcatgcgttagtgttac--tttttgcgcttaggaggttgaggct |
502 |
Q |
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| T |
1249892 |
gttgaaggtaccggcttgtatgttttatgattggggatggaacccgggagattgtctcatgcgttagtgttactgtttttgcgcttaggaggttgaggct |
1249991 |
T |
|
| Q |
503 |
ggggtatgctttggtttgctgcttcct----------------gctttttggtatatggcggcctcaatttcttgacagtagccgctaggaggttctgat |
586 |
Q |
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| T |
1249992 |
ggggtatgctttggtttgctgcttcctgctttctggtatgctggctttttggtatatggcggcctcaatttcttgacagtagctgctaggaggttctgat |
1250091 |
T |
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| Q |
587 |
ta |
588 |
Q |
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| T |
1250092 |
ta |
1250093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 277 - 434
Target Start/End: Original strand, 17103596 - 17103758
Alignment:
| Q |
277 |
ggttaatttagcatgcggcagtgtggagcatttggagggcgagaagcgaccgcatcttcaataattcagttcgcgaggtggaggagattgtggaa---ac |
373 |
Q |
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| T |
17103596 |
ggttaatttggcatgcggtggtgtggagcatttggatggcgagaaacgaccgtatcttcaataactcagtccgcacggcggaggagattgtggaaaatat |
17103695 |
T |
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| Q |
374 |
taaggttttgtcctg--gatggaccttgactcggttgaaggtaccggcttgtatgttttatga |
434 |
Q |
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| T |
17103696 |
taaggtttgatcttggagatggactttgtcgcggttgaaggtgccgacatgtatgttttatga |
17103758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 449
Target Start/End: Original strand, 41029664 - 41029716
Alignment:
| Q |
397 |
ttgactcggttgaaggtaccggcttgtatgttttatgattggggttggaaccc |
449 |
Q |
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|||| |||||||||||| |||||||| |||||||||| ||| |||||||||| |
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| T |
41029664 |
ttgagtcggttgaaggtgacggcttgtttgttttatgaatggtgttggaaccc |
41029716 |
T |
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