View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_14 (Length: 606)
Name: NF19929_high_14
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 16 - 589
Target Start/End: Complemental strand, 40900410 - 40899837
Alignment:
| Q |
16 |
attataattcatagaatcgtgctttaaaattcaaaattgaaaacagaaatataataaactactatatactaaattgtcaatgaactaacttgttgaacag |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40900410 |
attataattcatagaatcatgctttaaaattcaaaattgaaaacagaaatataataaactactatatactaaattgtcaatgaactaacttgttgaacag |
40900311 |
T |
|
| Q |
116 |
gtttgttatgatctttcgggtttacaaactcattcaccccaaacttcttagctgtcaacaagnnnnnnntaagaaatgccatcaataaaagaaatagtca |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40900310 |
gtttgttatgatctttcgggtttacaaactcatttaccccaaacttcttagctgtcaacaagaaaaaaataagaaatgccatcaataaaagaaatagtca |
40900211 |
T |
|
| Q |
216 |
ttgaattcatgttgaccagaatctacaagcatttgatggaataagaaagcactgtacctaattcaaatcggctggaaactaaatcaactccaatgattct |
315 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40900210 |
ttgaattcatgttaaccagaatctacaagcatttgatggaataagaaagcactgtacctaattcaaatcggctggaaactaaatcaactccaatgattct |
40900111 |
T |
|
| Q |
316 |
tgatgcaccagatatcctggctccttcagcagcctaaattttggtttaagagaagggcagaagttaatattggctcttttcatttccgataataattgca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40900110 |
tgatgcaccagatatcctggctccttcagcagcctaaattttggtttaagagaagggcagaagttaatattggctcttttcatttccgataataattgca |
40900011 |
T |
|
| Q |
416 |
atttgcaacacgcacaaacacgtgcatgcacactcaaggtataagagtaacataccgcaaggccaacagctccaaggccaaagatagcaacagatgaacc |
515 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40900010 |
atttgcaacacgcacaaacacgtgcatgcacactcaaggtataagagtaacataccgcaagcccaacagctccaaggccaaagatagcaacagatgaacc |
40899911 |
T |
|
| Q |
516 |
gggttttggtttagctacattgatagtagcaccaagacctgcaaaagcaaggaagcaaattgaattagagaaac |
589 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
40899910 |
gggttttggtttagctacattgatagtagcaccaagacctgtaaaagcatggaagcaaattgaattagagaaac |
40899837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 95 - 364
Target Start/End: Complemental strand, 40904866 - 40904596
Alignment:
| Q |
95 |
atgaactaacttgttgaacaggtttgttatgatctttcgggtttacaaactcattcaccccaaacttcttagctgtcaacaagnnnnnnntaagaaatgc |
194 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
40904866 |
atgaactaacttgttgaacaggtttgtcatgatctttagggtttacaaactcattcaccccaaacttcttagctgccaacaagaaaaaaaaaagaaatgt |
40904767 |
T |
|
| Q |
195 |
catcaataaaagaaatagtcattgaattcatgttgaccagaatctacaagcatttgatggaataagaaa-gcactgtacctaattcaaatcggctggaaa |
293 |
Q |
| |
|
||||||||||||||| |||||||||||| |||| || ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
40904766 |
catcaataaaagaaacagtcattgaatttgtgttaacttcaatcttaaagcatttgatggaataagaaaagcattgtacctaattcaaatcggctggaaa |
40904667 |
T |
|
| Q |
294 |
ctaaatcaactccaatgattcttgatgcaccagatatcctggctccttcagcagcctaaattttggtttaa |
364 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||||| |
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| T |
40904666 |
ctaaatcaaccccaatgattcttgatgcaccagaaatccttgccccttcagcagcctaaattgtggtttaa |
40904596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 444 - 582
Target Start/End: Complemental strand, 40904548 - 40904410
Alignment:
| Q |
444 |
cacactcaaggtataagagtaacataccgcaaggccaacagctccaaggccaaagatagcaacagatgaaccgggttttggtttagctacattgatagta |
543 |
Q |
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|
||||| |||| ||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||| |
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| T |
40904548 |
cacacacaagatatgagagtaacatacagcaaggccaacagctccaagtccaaagatagcgacagaagaaccgggttttggtttagcaacattgatagta |
40904449 |
T |
|
| Q |
544 |
gcaccaagacctgcaaaagcaaggaagcaaattgaatta |
582 |
Q |
| |
|
|||||||||||| | ||| | ||||||||||||||||| |
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| T |
40904448 |
gcaccaagacctatagaagtatggaagcaaattgaatta |
40904410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 242 - 350
Target Start/End: Complemental strand, 40881508 - 40881400
Alignment:
| Q |
242 |
aagcatttgatggaataagaaagcactgtacctaattcaaatcggctggaaactaaatcaactccaatgattcttgatgcaccagatatcctggctcctt |
341 |
Q |
| |
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||||||||| ||||||||||||||| | |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
40881508 |
aagcatttggtggaataagaaagcattttacctaattcgaaacggctggaaactaaatcgactccaatgattcttgatgcaccagatatccttgctcctt |
40881409 |
T |
|
| Q |
342 |
cagcagcct |
350 |
Q |
| |
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||||||||| |
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|
| T |
40881408 |
cagcagcct |
40881400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 444 - 555
Target Start/End: Complemental strand, 40881337 - 40881226
Alignment:
| Q |
444 |
cacactcaaggtataagagtaacataccgcaaggccaacagctccaaggccaaagatagcaacagatgaaccgggttttggtttagctacattgatagta |
543 |
Q |
| |
|
|||||||| ||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| ||| |
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| T |
40881337 |
cacactcatggtatgaaagtaacatacagcaaggccaacagctccaagtccaaagatagcaacagaagaaccgggtttcggtttagcaacattgatggta |
40881238 |
T |
|
| Q |
544 |
gcaccaagacct |
555 |
Q |
| |
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|||||||||||| |
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| T |
40881237 |
gcaccaagacct |
40881226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 40881638 - 40881565
Alignment:
| Q |
96 |
tgaactaacttgttgaacaggtttgttatgatctttcgggtttacaaactcattcaccccaaacttcttagctg |
169 |
Q |
| |
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||||||||| ||||| |||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||| |
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| T |
40881638 |
tgaactaacctgttgtacaggtttgtcatgatcttttgggttcacaaactcatttaccccaaacttcttagctg |
40881565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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