View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_high_2 (Length: 835)
Name: NF19929_high_2
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 727; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 8 - 816
Target Start/End: Original strand, 41646012 - 41646822
Alignment:
| Q |
8 |
cgaagaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttcta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646012 |
cgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttcta |
41646111 |
T |
|
| Q |
108 |
taaacaaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646112 |
taaacaaggggtctacaatcaacttcacagatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaaga |
41646211 |
T |
|
| Q |
208 |
agcatatatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactgga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646212 |
agcatatatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactgga |
41646311 |
T |
|
| Q |
308 |
atgatgcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646312 |
atgatgcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtc |
41646411 |
T |
|
| Q |
408 |
ttttgtcctatcttttgaatctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggttannnn |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646412 |
ttttgtcctatcttttgaatctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggttatttt |
41646511 |
T |
|
| Q |
508 |
nnnataatgatattttttgagtaacaaataatgctactttgttcgtctcaaagtggatgcctttataagattaataatgctcacatcttataaaaatgat |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41646512 |
tttataatgatattttttgagtaacaaataatgctactttgttcgtctcatagtgcatgcctttataagattaataatgctcgcatcttataaaaatgat |
41646611 |
T |
|
| Q |
608 |
tagtcatacaacttttcaatgg-nnnnnnnnncgttattataatgttactaacttacggtatacttgcaactacttccataaataaggatgatatcagaa |
706 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646612 |
tagtcatacaacttttcaatggaaaaaaaaaacgttattataatgttactaacttacggtatacttgcaactacttccataaataaggatgatatcagaa |
41646711 |
T |
|
| Q |
707 |
agaaag-aaaaagtagaaagtgctatattggtattttatttacttgactcttgctttatgagatctcactctcctcgtgcagactatgcttattggtgga |
805 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41646712 |
agaaagaaaaaagtagaaagtgctatattggtattttatttacttgactcttgctttatgagatctcactctcctcgtgcagactatgcttattggtgga |
41646811 |
T |
|
| Q |
806 |
agtgagccagc |
816 |
Q |
| |
|
||||||||||| |
|
|
| T |
41646812 |
agtgagccagc |
41646822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 526
Target Start/End: Original strand, 41653219 - 41653729
Alignment:
| Q |
13 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||||||| ||| |
|
|
| T |
41653219 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcataccaatcaattcgagaggaagaggtgtcgaaattaattagatatatttctattaac |
41653318 |
T |
|
| Q |
113 |
aaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
212 |
Q |
| |
|
| || ||||| |||||| | || |||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41653319 |
actggatctaccatcaaccttacagatgaaattttatctttgacatatagcatcacttcaagggcatcttttggtgataattgtaaggacaatgaagcat |
41653418 |
T |
|
| Q |
213 |
atatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactggaatgat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||| | |
|
|
| T |
41653419 |
atatcttgttcatgaaggaatctatgtctgtggctgagagtttcagtattcataatttgtttccctcccagcattggctacatgtgattagtggaatggt |
41653518 |
T |
|
| Q |
313 |
gcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtcttttg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41653519 |
gcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtcttttg |
41653618 |
T |
|
| Q |
413 |
tcctatcttttgaatctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggttannnnnnnat |
512 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41653619 |
tcctatcttttgaatctcaaacatgatg---cttctaatcctgatggatttcatttgacaatcaacaacattaaagccgttattcaggttatttttttat |
41653715 |
T |
|
| Q |
513 |
aatgatattttttg |
526 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41653716 |
aatgatattttttg |
41653729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 41623789 - 41623367
Alignment:
| Q |
13 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaac |
112 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
41623789 |
aatatgcacattggagttgttgagtgctaaacgtgcgaaatcattccaatcaattcgagaggaagagttgtcaaaattaattagatatatttctataaac |
41623690 |
T |
|
| Q |
113 |
aaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
212 |
Q |
| |
|
| || ||||| |||||| | || |||||||| | | ||||||||||||||||| |||||||||| ||||||||||||| || || || ||||||||| |
|
|
| T |
41623689 |
actggatctactatcaaccttacagatgaaatatcatctatgacatataacatcatttcaagggcaacttttggtgataaatgcaatgatcaagaagcat |
41623590 |
T |
|
| Q |
213 |
atatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactggaatgat |
312 |
Q |
| |
|
|||||||||||| ||||||| || ||||| ||||||| ||| || | ||||||||| || || || ||||||||||||||||||| ||||||| | |
|
|
| T |
41623589 |
ttatcttgttcatcaaggaatgtacaagggtggttgagagtgtcaatatccctaatttgtttccctctcaacattggctacatgtgattagtggaatggt |
41623490 |
T |
|
| Q |
313 |
gcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtcttttg |
412 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||| | || ||||| |||||||| || || |||||| |||| ||||||||| ||| | |
|
|
| T |
41623489 |
acataaattgaagacaatgcatagaagtggtgatatggttcttgagaagatcat---caacaaagcaataacaaagaccagtggagatggaagccttcta |
41623393 |
T |
|
| Q |
413 |
tcctatcttttgaatctcaaacatga |
438 |
Q |
| |
|
|| | ||||||||||||||| |||| |
|
|
| T |
41623392 |
tcttgccttttgaatctcaaagatga |
41623367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 747 - 811
Target Start/End: Original strand, 41654288 - 41654352
Alignment:
| Q |
747 |
acttgactcttgctttatgagatctcactctcctcgtgcagactatgcttattggtggaagtgag |
811 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41654288 |
acttgactcttgttttatgagatctcactctcctagtgcagactatgcttattggtggaagtgag |
41654352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 665 - 747
Target Start/End: Original strand, 41654097 - 41654175
Alignment:
| Q |
665 |
gtatacttgcaactacttccataaataaggatgatatcagaaagaaagaaaaagtagaaagtgctatattggtattttattta |
747 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| || ||||||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
41654097 |
gtatacttgcaaccacttcaataaataaggatgacattagaaagaaaaaaata----aaagtgctatattggtattttattta |
41654175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 41463649 - 41463701
Alignment:
| Q |
41 |
aaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaat |
93 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
41463649 |
aaacgtgtgagatcattccaatcaattagagaagaagaggtatcaaatttaat |
41463701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 13 - 503
Target Start/End: Original strand, 2432037 - 2432524
Alignment:
| Q |
13 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaac |
112 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||| |||| |||| | ||||||||||| |
|
|
| T |
2432037 |
aatatgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttctataaac |
2432136 |
T |
|
| Q |
113 |
aaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
212 |
Q |
| |
|
| || ||| |||||| |||| ||||||||||| ||||| |||||||||| ||| |||||| ||||||||||||| || ||||| ||||||||| |
|
|
| T |
2432137 |
actggaactattatcaacctcactcatgaaattttatctatgcaatataacatcatttctagggcaacttttggtgataaatgcaaggagcaagaagcat |
2432236 |
T |
|
| Q |
213 |
atatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactggaatgat |
312 |
Q |
| |
|
||| | |||||| |||||| |||| | |||| |||||||||| | ||||||||| || ||||| |||||| |||||||||||| ||||||| | |
|
|
| T |
2432237 |
ataccaagttcatcaaggaaactataaagttggcagagagtttcagtgtcactaatttgtttccctcccaacattggttacatgtgattagtggaatggt |
2432336 |
T |
|
| Q |
313 |
gcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtcttttg |
412 |
Q |
| |
|
||||||||||| | | || | | |||||||||| ||||| |||||||||||||| | |||| | || |||||| || |||||||||||||||| |
|
|
| T |
2432337 |
ttgtaaattgaagaaaattcacaagactggtgatatgattcttgaaaatatcatcaacga-aaag--aaaacaaagactgatggagatggaagtcttttg |
2432433 |
T |
|
| Q |
413 |
tcctatcttttgaatctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggtta |
503 |
Q |
| |
|
||||||||||||| |||||| || |||||||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2432434 |
tcctatcttttgagtctcaatgatcatggctcttccaaccctgatggatttcatttgacaatcaacaacattaaagctgttattcaggtta |
2432524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 17 - 503
Target Start/End: Complemental strand, 12439445 - 12438962
Alignment:
| Q |
17 |
tgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaacaagg |
116 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||| ||||| || |||| | || ||||| ||||| | |
|
|
| T |
12439445 |
tgcacattggagctgttgagtacgaaccgtgtgagatcattccaatcaattaggaaggaagaggtgtcaaattttattaaaaatatttcttcaaacactg |
12439346 |
T |
|
| Q |
117 |
ggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcatatat |
216 |
Q |
| |
|
| |||| ||||||| ||| ||||||||||| || || |||||||||| |||||| ||| ||||||||||||| || ||||| ||||||||| || |
|
|
| T |
12439345 |
gatctaaaatcaacctcagtcatgaaattttatctttgtcatataacattatttcaagagcagcttttggtgataaatgcaaggagcaagaagcatttac |
12439246 |
T |
|
| Q |
217 |
cttgttcatgaaggaatctatgtcggtggctgagagtttcaccattca-taatttgttcccatcccagcattggctacatgtgattactggaatgatgca |
315 |
Q |
| |
|
| ||||| |||||| || | ||||||||||||| | |||| |||| |||| || || ||||||||||||||||| |||| ||||||||| |
|
|
| T |
12439245 |
cacattcatcaaggaaactgcaaagatggctgagagtttta-gtttcactaatctgtttccctcacagcattggctacatgttattagtggaatgattgt |
12439147 |
T |
|
| Q |
316 |
taaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtcttttgtcc |
415 |
Q |
| |
|
|||||||| || | | |||| || ||| ||| | ||||| |||| || || |||||| | ||||| |||||| ||| ||||||||||||||| ||| |
|
|
| T |
12439146 |
taaattgaggaaaatccataaaactggagatgagattcttgaaaagattat---caacaatgcaacaacaaagacaggtggagatggaagtcttttatcc |
12439050 |
T |
|
| Q |
416 |
tatcttttgaatctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggtta |
503 |
Q |
| |
|
||||||||||||||||| | ||| ||| |||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
12439049 |
tatcttttgaatctcaatattcatgcatctcctaaccgtgatggatttcatttgacaaccaacaacattaaagctgttattcaggtta |
12438962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 397 - 503
Target Start/End: Complemental strand, 5023057 - 5022951
Alignment:
| Q |
397 |
agatggaagtcttttgtcctatcttttgaatctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttatt |
496 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | ||||||||| |||| ||| |||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
5023057 |
agatggaagtctactgtcctatcttttgaatctcaaagacgatggctctcctaacccgattggatttcatttgacaatcaacaatattaaagccattatc |
5022958 |
T |
|
| Q |
497 |
caggtta |
503 |
Q |
| |
|
||||||| |
|
|
| T |
5022957 |
caggtta |
5022951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 749 - 811
Target Start/End: Complemental strand, 5022502 - 5022440
Alignment:
| Q |
749 |
ttgactcttgctttatgagatctcactctcctcgtgcagactatgcttattggtggaagtgag |
811 |
Q |
| |
|
|||| |||| ||| ||||||||||||| || | |||||| |||||||||||||||||||||| |
|
|
| T |
5022502 |
ttgaatctttcttcatgagatctcactatcatggtgcaggatatgcttattggtggaagtgag |
5022440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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