View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_23 (Length: 503)
Name: NF19929_high_23
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_23 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 7 - 503
Target Start/End: Complemental strand, 33388902 - 33388406
Alignment:
| Q |
7 |
gctattacgaaagtggtggagattcacacgaaagaacctgccggaggcatgcttgtttttcttaccggagaggaagagatagaagatgcttgccgaaaaa |
106 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33388902 |
gctattacgaaagtggtagagattcacacgaaagaacctgctggagacatacttgtttttcttaccggagaggaagagatagaagatgcatgccgaaaaa |
33388803 |
T |
|
| Q |
107 |
tatcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaagatttttga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33388802 |
tatcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattctacccttcccccagctatgcagcagaagatttttga |
33388703 |
T |
|
| Q |
207 |
gccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagta |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388702 |
gccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagta |
33388603 |
T |
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| Q |
307 |
tatgttattgaccctggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacacc |
406 |
Q |
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| T |
33388602 |
tatgttattgaccctggatttgccaagcagaaggtttataatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacacc |
33388503 |
T |
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| Q |
407 |
agagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcc |
503 |
Q |
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| T |
33388502 |
agagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcc |
33388406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 503
Target Start/End: Complemental strand, 38779943 - 38779447
Alignment:
| Q |
7 |
gctattacgaaagtggtggagattcacacgaaagaacctgccggaggcatgcttgtttttcttaccggagaggaagagatagaagatgcttgccgaaaaa |
106 |
Q |
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||||||| || ||||||| ||||||||| | |||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||| ||||| |||| |
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| T |
38779943 |
gctattaggacagtggtgcagattcacatgtgtgaacctgctggagacatacttgtttttcttaccggagaggaggagatagaagatgcatgccgcaaaa |
38779844 |
T |
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| Q |
107 |
tatcaaacaaagttgcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaagatttttga |
206 |
Q |
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| T |
38779843 |
tatctaaagaagttgcaaacatgggggaccaggtgggccctgtgaaagccgtgccattatattctactcttcccccagctatgcaacagaagatttttga |
38779744 |
T |
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| Q |
207 |
gccagctccgcctccagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagta |
306 |
Q |
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| T |
38779743 |
gccagctccacctccagttaaggagggaggcccccctggaaggaagattgtggtatcaacaaacatagcagaaacttccttgacaattgatggtatagtc |
38779644 |
T |
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| Q |
307 |
tatgttattgaccctggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacacc |
406 |
Q |
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| T |
38779643 |
tatgttattgatcctggatttgctaagcagaaggtctataaccctcgagttcgtgttgagtctttgttggtgtctccaatatcaaaagctagtgcacacc |
38779544 |
T |
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| Q |
407 |
agagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcc |
503 |
Q |
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| T |
38779543 |
agaggtctggacgtgctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcc |
38779447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 503
Target Start/End: Original strand, 20816216 - 20816698
Alignment:
| Q |
21 |
ggtggagattcacacgaaagaacctgccggaggcatgcttgtttttcttaccggagaggaagagatagaagatgcttgccgaaaaatatcaaacaaagtt |
120 |
Q |
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|||| ||||||||||| |||||||| |||| | | |||||||||||||| ||||||||||||||||||||||| || || |||||||| || ||||| |
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| T |
20816216 |
ggtgcagattcacacgcttgaacctgctggagacgtacttgtttttcttactggagaggaagagatagaagatgcatgtcgcaaaatatccaatgaagtt |
20816315 |
T |
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| Q |
121 |
gcaaatttaggggagaaggtgggccctgtgaaagtgttatcactgtattccacccttcccccagctatgcagcagaagatttttgagccagctccgcctc |
220 |
Q |
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| T |
20816316 |
gcaattcggggggacacggtgggccctgtgaaagttgtaccgttgtattctactcttcccccggctatgcaacacaggatttttgagccagctccacctc |
20816415 |
T |
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| Q |
221 |
cagttaaggagggaggcctccctggaagaaagattgtggtatcaacaaacatagcagaaacttctttgactattgatggtatagtatatgttattgaccc |
320 |
Q |
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|||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||| |||||| ||||||| |
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| T |
20816416 |
cagttagagagggaggccttcctggaaggaagattttggtatcaacaaacatagcagaaacttcattgaccatcaatggtatagtctatgttgttgaccc |
20816515 |
T |
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| Q |
321 |
tggatttgccaagcagaaggtttattatccccgaactcgtgttgagtctttgttggtgtctccaatatcaaaggctagtgcacaccagagatcaggtcgt |
420 |
Q |
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|||||| || ||||||||||||||| | || ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||| |
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| T |
20816516 |
tggattggctaagcagaaggtttataaccctcgagctcgtgttgagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgt |
20816615 |
T |
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| Q |
421 |
gccggaagaactcaaccggggaaatgctatagactctataccaaaataagtttcagtaatgatcttcagccgcagacctatcc |
503 |
Q |
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|| |||||||| ||||| |||||||||| |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||| |
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| T |
20816616 |
gctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcc |
20816698 |
T |
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