View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_26 (Length: 475)
Name: NF19929_high_26
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_26 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 49 - 321
Target Start/End: Complemental strand, 11625231 - 11624964
Alignment:
| Q |
49 |
acatacaatagttacattaaatca-ttatgttgtctcaaataattagtggtgtcgacatgttagtgttggtgccgtgtctcatgttcatcgttaaccttt |
147 |
Q |
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| T |
11625231 |
acatacaatagttacattaaatcacttatgttgtctcaaataattagtggtgtcgacatgttagtgttggtgccatgtctcatgttcatcgttaaccttt |
11625132 |
T |
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| Q |
148 |
aatgaaaacttgtgtcaaattaataggatcctgaagcagataaagatactgaggaaaagaaagaagctgatcctccaccggatgccgcagagatcaagaa |
247 |
Q |
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| T |
11625131 |
aatgaaaacttgtgtcaaattaataggatcctgaagcagataaagatactgaggaaaagaaagaagctgatcctccaccagatgcagcagagatcaagaa |
11625032 |
T |
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| Q |
248 |
caacaacaattcagcagcaacattaccggagggtattcagaacccaaaaacaccttccatagatgaagaaactt |
321 |
Q |
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| T |
11625031 |
caacaacaattcagcagcaacattaccggagggt------aacccaaaaacaccttccatagatgaagaaactt |
11624964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 394 - 475
Target Start/End: Complemental strand, 11624891 - 11624810
Alignment:
| Q |
394 |
cagacaaattactcctgtgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagcc |
475 |
Q |
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| T |
11624891 |
cagacaaattactcctgtgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagcc |
11624810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 18188160 - 18188204
Alignment:
| Q |
431 |
ggacacaaagttctgttactacaataattacaacgtcaatcagcc |
475 |
Q |
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| T |
18188160 |
ggacacaaaattttgttactacaataattacaacgccaaccagcc |
18188204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 18193381 - 18193445
Alignment:
| Q |
411 |
tgtccacgctgcaacagcgcggacacaaagttctgttactacaataattacaacgtcaatcagcc |
475 |
Q |
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| T |
18193381 |
tgtccaagatgcaaaagcgtagacacaaaattttgttactacaataattacaacgccaaccagcc |
18193445 |
T |
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