View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_high_28 (Length: 460)
Name: NF19929_high_28
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 37084106 - 37083664
Alignment:
| Q |
11 |
gatgaacctaaagtagcaagctagtatttctatatgtttcgtaaatgctatggcagtgagtggtttcacttaatgcatgcaaataattactaattggttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37084106 |
gatgaacctaaagtagcaagctagtatttctatatgtttcgtaaatgctatggcagtgagtggtttcacttaatgcatgcaaataattactaattggttt |
37084007 |
T |
|
| Q |
111 |
ctgaaatgattgagtcagagtaaagagggtctctctttacttaattgtttcgnnnnnnnnnnnnnn--------gactaaaattttacacgtacagaagt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37084006 |
ctgaaatgattgagtcagagtaaagagggtctctctttacttaattgtttcgatatatatatatatatatatatgactaaaattttacacgtacagaagt |
37083907 |
T |
|
| Q |
203 |
agttttgcaaaaacaaacatgacgcgaagtacttctgactgaaaattagcaggcttgcaattaatcaccatgtatctttcaattctgggaaattcgctaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37083906 |
agttttgcaaaaacaaacatgacgcgaagtacttctgactgaaaattagcaggcttgcaattaatcaccatgtatctttcaattctgggaaattcgctaa |
37083807 |
T |
|
| Q |
303 |
caatttgttcacaactcgcatgtactcgttgccttgcacatacatgtgctattgctaaaggcaacaagttagcaacttcctccaacctgaactgttggct |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37083806 |
caatttgttcacaactcgcatgtactcgttgccttgcacatacatgtgctattgctaaaggcaacaagttagcaacttcctccaacctgaactgttggct |
37083707 |
T |
|
| Q |
403 |
ttttcctgcaggcattaagaatatggcataaatatattcttat |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37083706 |
ttttcctgcaggcattaagaatatggcataaatatattcttat |
37083664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 37185912 - 37185999
Alignment:
| Q |
357 |
ctaaaggcaacaagttagcaacttcctccaacctgaactgttggctt-tttcctgcaggcattaagaatatggcataaatatattctt |
443 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||| |||| | ||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
37185912 |
ctaaaggcaacaagttagtaatttcttccaacctgaacagttgtttagtttcctgcaagcattaaaaatatggcataaatatattctt |
37185999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 278 - 441
Target Start/End: Original strand, 11002126 - 11002291
Alignment:
| Q |
278 |
ctttcaattctgg-gaaattcgctaac-aatttgttcacaactcgcatgtactcgttgccttgcacatacatgtgctattgctaaaggcaacaagttagc |
375 |
Q |
| |
|
||||||||| ||| ||||||| ||||| ||||||||| |||||||| | ||||| ||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
11002126 |
ctttcaattgtggtgaaattcactaaccaatttgttcgcaactcgcgtatactcattgccttgcacatacctgtgctattgctaaagaaaacaagttagc |
11002225 |
T |
|
| Q |
376 |
aacttcctccaacctgaactgttggctttttcctgcaggcattaagaatatggcataaatatattc |
441 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11002226 |
aacttcctccgacctgaactgttgtttttttcctgcaagcattaagaatatggcataaatatattc |
11002291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University