View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_29 (Length: 457)
Name: NF19929_high_29
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 37269230 - 37268808
Alignment:
| Q |
16 |
cagtaacttgttgaacaaacaaattttctattgatatagacaaaaatgaagcattagacttatatacatgtatctacttatatttcaatagggcaagttt |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37269230 |
cagtaacttgttgaacaaacaaattttctatcgatataggtaaaaatgaagcattagacttatatacatgtatctacttatatttcaatagggcaagttt |
37269131 |
T |
|
| Q |
116 |
ggaaaaggctaagaaagagttatcaacaagcgtggagaagggagtttctttgtatgagtaatgctatatctagctaattaatatttcgggagacttcatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37269130 |
ggaaaaggctaagaaagagttatcaacaagcgtggagaagggagtttccttatatgagtaatgctatatctagctaattaatatttcgggagacttcatc |
37269031 |
T |
|
| Q |
216 |
aagcatctattggggttaaacattactcaaaggcaacccaattttatcaacacattttttgtcaccgtgatattagtacgaagtttccactatcgtttaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37269030 |
aagcatctattggggttaaacattactcaaaggcaacccaattttatcaacaca--ttttgtcaccatgatattagtacgaagtttccactatcgtttaa |
37268933 |
T |
|
| Q |
316 |
acatgactaatctttgtcagaaaatctatagaacacataaggtggattctccccttccaaccagattttttccatttgtatgagtcggaagtcaaacctc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37268932 |
ccatgactaatctttgtcagaaaatctatagaacacataaggtggattctccccttccaaccagattttttccatttgtatgagtcggaagtcaaacctc |
37268833 |
T |
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| Q |
416 |
aaacaaatacataaaaggctaaagt |
440 |
Q |
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| T |
37268832 |
agacaaatacataaaaggctaaagt |
37268808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 4988058 - 4987908
Alignment:
| Q |
16 |
cagtaacttgttgaacaaacaaattttctattgatatagacaaaaatgaagcattagacttatatacatgtatctacttatatttcaatagggcaagttt |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4988058 |
cagtaacttgttgaacaaacaaattttctatcgatataggtaaaaatgaagcattagacttatatacatgtatctacttatatttcaatagggcaagttt |
4987959 |
T |
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| Q |
116 |
ggaaaaggctaagaaagagttatcaacaagcgtggagaagggagtttcttt |
166 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4987958 |
ggaaaaggctaagaaagagttagcaacaagcgtggagaagggagtttcttt |
4987908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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