View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_31 (Length: 448)
Name: NF19929_high_31
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 49819289 - 49819702
Alignment:
| Q |
14 |
catcatcaacggacttgatggattaaaggtaggatgaaacaaatgaggtgccattacattactaatggagctaagtcgctccttcaaagacataattcaa |
113 |
Q |
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| T |
49819289 |
catcatcaacggacttgatggattaaaggtaggatgaaacaaatgaggtgccattacattactaatggagctaagtcgctccttcaaagacataattcaa |
49819388 |
T |
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| Q |
114 |
gaacgagacttgttgctaaaggctcaatgaaatgaaaatagtgcatcacgaacttcgggatcacacgggccaagaaagaccatgtagagaaatttgtact |
213 |
Q |
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| T |
49819389 |
gaacgagacttgttgctaaaggctcaatgaaatgaaaatagtgcatcacgaacttcgggatcacacgagccaagaaagaccatgaagagaaatttgtact |
49819488 |
T |
|
| Q |
214 |
gtaacaattagaagtttctttatcctttcatgacatggtcaacaagatggcgagcaacaagaagatagtggatctgttttgacgtaccaaacaaaatagt |
313 |
Q |
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| T |
49819489 |
gtaacaattagaagtttctttatcctttcatgacatggtcaacaagatgtcgagcaacaagaagatagtggatctgttttgacgtaccaaacaaaatagt |
49819588 |
T |
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| Q |
314 |
tgatagagttaagattgataggtagttgagtggtgactttttactctatgagatgtttttgtgctgaagaggttggatcgttgtaagatgtggtttgatc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49819589 |
tgatagagttaagattgataggtagttgagtggtgactttttactctatgagatgtttttgtgctgaagaggttggatcgttgtaagatgtggtttgatc |
49819688 |
T |
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| Q |
414 |
aaccatggtggatt |
427 |
Q |
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| T |
49819689 |
aaccatggtggatt |
49819702 |
T |
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