View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_33 (Length: 430)
Name: NF19929_high_33
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 2055246 - 2054843
Alignment:
| Q |
18 |
attagctcgccgctaaatccacaagcagctcagctttggagcaaccaagaaggtaaataaacattattgacattttgcagaagatttgtaaatatgtaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2055246 |
attagctcgccgctaaatccacaagcagctcagctttggagcaaccaagaaggtaaataaacattattgacattttgcagaagatttgtaaatatgtaca |
2055147 |
T |
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| Q |
118 |
acttgtgaaagatgaactgatttttctatgttctactttctacagagtacaggaagatggtggagaagttgtacaaagatcctgctgcttaacttttgat |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2055146 |
acttgtgaaagatgaactgattttgctatgttctactttctacagagtacaggaagatggtggagaagttgtacaaagatcctgctgcttaacttttgat |
2055047 |
T |
|
| Q |
218 |
ctcggagttcattgatttctcttctctatgtctggttgttgatctgctttggaaaagagaagggatgaaatttttaaagcttgtttcatcctttcctttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2055046 |
ctcggagttcattgatttctcttctctatgtctggttgttgatctgctttggaaaagagaagggatgaaatttttaaagcttgtttcatcctttcctttt |
2054947 |
T |
|
| Q |
318 |
caattttcaaatggggctttggaatttctatacatgattgttcctctcttttgttgagaattagttaaaagttaaaacattgtcatagattattttattc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2054946 |
caattttcaaatggggctttggaatttctatacatgattgtttctctcttttgttgagaattagttaaaagttaaaacattgtcatagattattttattc |
2054847 |
T |
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| Q |
418 |
ttct |
421 |
Q |
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|||| |
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| T |
2054846 |
ttct |
2054843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 29178013 - 29178056
Alignment:
| Q |
30 |
ctaaatccacaagcagctcagctttggagcaaccaagaaggtaa |
73 |
Q |
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| T |
29178013 |
ctaaatccacaagcagcacagctttggagcaatcaagaaggtaa |
29178056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 29178141 - 29178177
Alignment:
| Q |
158 |
tacagagtacaggaagatggtggagaagttgtacaaa |
194 |
Q |
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| T |
29178141 |
tacagattacaggaagatggtggagaagttgtacaaa |
29178177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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