View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_high_37 (Length: 407)
Name: NF19929_high_37
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_37 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 94 - 407
Target Start/End: Original strand, 7242778 - 7243076
Alignment:
| Q |
94 |
atgatgtggtctctcaactctgaagcaatgtggtgaaaaatacaactgaccaagttttttagcttggaatcattggatgtggaatcaggtagcaatctct |
193 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7242778 |
atgatgtggtttctcaactctgaaccaatgtggtgaaaaatacaactgaccaaattttttagcttggaatcattggatgtggaatcaggtagcaatctct |
7242877 |
T |
|
| Q |
194 |
agattcaattattatttggaacgctggttgctaggaaatgatttgaatcaatgagttttaacgagaaaaattaatattctagacaactctatgtttctat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7242878 |
agattcaattattatttggaacgctggttgctaggaaatgatttgaatcaatgagttttaacgagaaaaattaatattctagacaactctatgtttctaa |
7242977 |
T |
|
| Q |
294 |
cttatatagtatgaatgacatgagtttgaacttgaggtcctcatcatattgaatatttttgtgctctttctacaatggagcaagtctttaagatgaacca |
393 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7242978 |
cttatatagta---------------tgaacttggagtcctcatcatattgaatttttttgtgctctttctacaatggagcaagtctttaagatgaacca |
7243062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 7242329 - 7242417
Alignment:
| Q |
13 |
aatatagcaggagaataacctctaatttgtgccctataagtaatgattagccagaaactctcatgcatgcaatatgtgactatgatgtg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7242329 |
aatatagcaggagaataacctctaatttgtgccctataagtaatgattagccagaaactctcatgcatgcaatatgtgactatgatgtg |
7242417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University