View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_42 (Length: 394)
Name: NF19929_high_42
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_42 |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 25616359 - 25616728
Alignment:
| Q |
11 |
gaagcaaaggaagaagctgcaccaacaattgtggctaagacaaagatggtacaaagaaaatatccctcgagagtatgcgttagnnnnnnnngggcagaga |
110 |
Q |
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| T |
25616359 |
gaagaaaaggaagaagctgcaccaacaattgtggctaagacaaagatggtacaaagaaaatatccctcgagagtatgtgttagaaaagaaaaggcagaga |
25616458 |
T |
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| Q |
111 |
ctttagctacaattgtgacaaagaagggtataccaagaaaaaatcctgctcctctttctgttattttagtagactgatataacaaatatatgttatctgt |
210 |
Q |
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| T |
25616459 |
cgttagctacaattgtgacaaagaagggtataccaagaaaaaatcctgctcctctttctgttattttagtagactgatataacaaatatatgttatctgt |
25616558 |
T |
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| Q |
211 |
tatatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaatccatgtatcggagttaatcatcaggatttatgtagctgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
25616559 |
tatatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaatccatgtatcggagttagttatcaggatttatgtagctgt |
25616658 |
T |
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| Q |
311 |
tatgattgatgatgctttagtggttgcatggtatgtgaatgatactgcattagacatcaaagtagatggt |
380 |
Q |
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| T |
25616659 |
tatgattgatgatgctttagtggttgcatggtatgtgaatgatactgcattagacatcaaagtagatggt |
25616728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 25611124 - 25611271
Alignment:
| Q |
203 |
ttatctgttatatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaatccatgtatcggagttaatcatcaggatttat |
302 |
Q |
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| T |
25611124 |
ttatctgttatatatatgatcagattgaaatagatactgagattaattaa-agtatgcttaacaacaatccatatattggagttagttattaggatttat |
25611222 |
T |
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| Q |
303 |
gtagctgttatgattgatgatgctttagtggttgcatggtatgtgaatg |
351 |
Q |
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| T |
25611223 |
gtagctgttatgattgatgttgtttttatggttgcattgtatgtgaatg |
25611271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 6356 - 6187
Alignment:
| Q |
211 |
tatatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaatccatgtatcggagttaatcatcaggatttatgtagctgt |
310 |
Q |
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| T |
6356 |
tatatatatgctcagattgaaatagatactgaaattaattaagagtatgtttaagaacaatccatgtatcggagttaattatcaggatttatgcagctgt |
6257 |
T |
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| Q |
311 |
tatgattgatgatgctttagtggttgcatggtatgtgaatgatactgcattagacatcaaagtagatggt |
380 |
Q |
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| T |
6256 |
tatgattgatgatgctttagtggttacatggtatgtgaatgatactgcattagacatcaaagtagatggt |
6187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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