View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_6 (Length: 728)
Name: NF19929_high_6
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 235 - 710
Target Start/End: Original strand, 40092880 - 40093354
Alignment:
| Q |
235 |
gaaactctcaaagaccctgtgttattgaaactcaaatgaagttgaggttgattttaaaacaagttaaaacatgagttgatcgttgannnnnnnnnnnnnn |
334 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40092880 |
gaaagtctcaaagagcctgtgttattgaaactcaaatgaagtcgaggttgattttaaaacaagttaaaacatgagttgatcattgatttttttttttatt |
40092979 |
T |
|
| Q |
335 |
nnnnnggagggagagttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatga |
434 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092980 |
tttttt-agggagagttgatgatggatgttccttctaaaaatgttcataatttattttttcaattaagttcttgaattattaaataataactttctatga |
40093078 |
T |
|
| Q |
435 |
tattattgatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaatt |
534 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093079 |
tattattgatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaatt |
40093178 |
T |
|
| Q |
535 |
gatctgctgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcat |
634 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093179 |
gatctgctgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcat |
40093278 |
T |
|
| Q |
635 |
tactatatctaacatgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccg |
710 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40093279 |
tactatatctaacatgaaccatatacacatcagaactatggagctttttttgacacatggggagcggggatcaccg |
40093354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40087841 - 40088077
Alignment:
| Q |
1 |
ttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40087841 |
ttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattctttt |
40087940 |
T |
|
| Q |
101 |
gaagcgttgatcttaaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcagg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40087941 |
gaagcgttgatcttaaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcagg |
40088040 |
T |
|
| Q |
201 |
taatttattcacaaggatatggtttttatattttgaaa |
238 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
40088041 |
taa-ttattcacaaggatatggtttttatattttgaaa |
40088077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 342 - 710
Target Start/End: Original strand, 40062329 - 40062702
Alignment:
| Q |
342 |
agggagagttgatgatggatgttccttttaaaaatgttcataatttattgtttcaattaagttcttgaattattaaataataactttctatgatattatt |
441 |
Q |
| |
|
||||||||||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
40062329 |
agggagagttgatcttggatgttccgtccaaaaatgttcataatttattgtttccattaagttcttgaattattaaattataactttcgatgatattatt |
40062428 |
T |
|
| Q |
442 |
gatgaattcttagggagtcaaaccgggaacaaagaaaaacctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgc |
541 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||| ||| ||| |||||| || |||||||||||| |
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| T |
40062429 |
gatgaattcttagggagtcacaccgggaacaaagacaaacctaagcttaatgtggacatcccaatcaaagtaatttatggaaataaccaaattgatctgc |
40062528 |
T |
|
| Q |
542 |
tgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactata |
641 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| |
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|
| T |
40062529 |
tgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttctctcattactata |
40062628 |
T |
|
| Q |
642 |
t-----ctaacatgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccg |
710 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
40062629 |
tctaagctaacatgaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccg |
40062702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 40061994 - 40062311
Alignment:
| Q |
1 |
ttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattctttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40061994 |
ttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgaacgatgattctgtacttctcgataacacttctattatattctttt |
40062093 |
T |
|
| Q |
101 |
gaagcgttgatcttaaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcagg |
200 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
40062094 |
gaagcgttgatcttaaggatgatcttggttctcaaactgtacttcacattgaatcactcggccatgcccttcatgctttcgtaaacggaaagcttgcagg |
40062193 |
T |
|
| Q |
201 |
taatttattcacaagga---tatggtttttatattttgaaactctcaaagaccctgtgttattgaaactcaaatgaagttgaggttgattttaaaacaag |
297 |
Q |
| |
|
||| |||||||| || | ||||||| | || |||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
40062194 |
taa-ttattcactagaattttatggttctaatgttttgaaagtctcaaagagcctgtattattgaaactcaaatgaagtcaaggttgattttaaaacaag |
40062292 |
T |
|
| Q |
298 |
tt-aaaacatgagttgatc |
315 |
Q |
| |
|
|| |||| ||||||||||| |
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|
| T |
40062293 |
ttaaaaatatgagttgatc |
40062311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 40080129 - 40080330
Alignment:
| Q |
1 |
ttgtggtactcattaaggtatacaagcctccaaatttgaaagatattttccctgactgatgattctgtacttctcgataacacttctattgtattctttt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| | |||| ||||||| ||||||||| |||||||||||| ||||||| |||| |
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|
| T |
40080129 |
ttgtggtactcattaaggtacacaagcctccaaatttgaaagatatttgctttgaccgatgattatgtacttcttgataacacttctcttgtatt-tttt |
40080227 |
T |
|
| Q |
101 |
gaagcgttgatcttaaggatgatcctggttctcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcagg |
200 |
Q |
| |
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|||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
40080228 |
aaagccttgatcttgcggatgatcccggttctcaaactgtcctgcacattgaatcacttggccatgcccttcatgctttcataaacggcaagcttgctgg |
40080327 |
T |
|
| Q |
201 |
taa |
203 |
Q |
| |
|
||| |
|
|
| T |
40080328 |
taa |
40080330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 482 - 601
Target Start/End: Original strand, 40080793 - 40080912
Alignment:
| Q |
482 |
ctaagcttaatgaggacatcccgatcacagttctttctggaaagaataaaattgatctgctgagtttaacagttggacttcaggttcagcttttcttgtt |
581 |
Q |
| |
|
|||||||||||| ||||||||| ||| || | |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40080793 |
ctaagcttaatgtggacatcccaatcgcactagtttccggaaagaacaaaattgatctactgagtttaacagttggacttcaggttcagcttttcttgtt |
40080892 |
T |
|
| Q |
582 |
tttagtttccaattatgcat |
601 |
Q |
| |
|
||||||||| || ||||||| |
|
|
| T |
40080893 |
tttagtttctaaatatgcat |
40080912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 597 - 678
Target Start/End: Original strand, 40080933 - 40081019
Alignment:
| Q |
597 |
tgcatagaattgcttgctcccccaatgatttctctcattactatatctaac-----atgaaccatatacacatcagaactatggagc |
678 |
Q |
| |
|
|||||||| | ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40080933 |
tgcatagactggcttgctccttcagtgatttctctcattactatatctaagctaatatgaaccatatacacatcagaactatggagc |
40081019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 22013525 - 22013454
Alignment:
| Q |
132 |
tcaaactgtccttcacattgaatcgctcggccatgcccttcatgctttcataaacggcaagcttgcaggtaa |
203 |
Q |
| |
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|||| |||| |||||||||||||| || |||||||||||||||||||| |||| || |||||||| ||||| |
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|
| T |
22013525 |
tcaacctgttcttcacattgaatcccttggccatgcccttcatgcttttgtaaatgggaagcttgctggtaa |
22013454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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