View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_65 (Length: 307)
Name: NF19929_high_65
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 40033799 - 40033527
Alignment:
| Q |
8 |
cgaagaaaatatctaactatcctaaatgataagaacacatcaaatagaaatgaaattgtaccctaaattgtgcgaaagaaatttaccttgaatgaagtta |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40033799 |
cgaacaaaatatctaactatcctaaatgataagaacacatcaaatagaaacgaaattgtaccctaaattgtgagaaagaaatttaccttgaatgaagtta |
40033700 |
T |
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| Q |
108 |
ctcagaaaccctagaaccggtagagaaaatgaaatggtgagagaataaacagggttacatgatttatatggtgcagcgtcgtttttctttattttgacgg |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40033699 |
ctcagaaaccctaga---------gaaaatgaaatggtgagagaataaacagggttacatgatttatatggtgcagcgtcgtttttctttattttgacgg |
40033609 |
T |
|
| Q |
208 |
aattgccctttgtttttgcatgcaccgccactctctgagccccctataatatactgccatgatttctggcttcaacacaaag |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40033608 |
aattgccctttgtttttgcatgcaccgccactctctgagccccctataatatactgccatgatttctggcttcaacacaaag |
40033527 |
T |
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