View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_high_68 (Length: 303)

Name: NF19929_high_68
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_high_68
NF19929_high_68
[»] chr7 (4 HSPs)
chr7 (20-60)||(9941748-9941788)
chr7 (156-218)||(9942221-9942281)
chr7 (118-152)||(9941846-9941880)
chr7 (215-257)||(42922286-42922328)
[»] chr8 (6 HSPs)
chr8 (215-257)||(3753406-3753448)
chr8 (215-257)||(19252218-19252260)
chr8 (215-257)||(19325402-19325444)
chr8 (253-288)||(19252139-19252174)
chr8 (253-288)||(19325323-19325358)
chr8 (253-288)||(45287751-45287786)
[»] chr5 (2 HSPs)
chr5 (215-257)||(4802535-4802577)
chr5 (253-288)||(4802621-4802656)
[»] chr2 (3 HSPs)
chr2 (215-257)||(30922334-30922376)
chr2 (253-288)||(30922420-30922455)
chr2 (217-257)||(33652547-33652587)
[»] chr6 (7 HSPs)
chr6 (215-257)||(34325404-34325446)
chr6 (253-288)||(2626165-2626200)
chr6 (253-288)||(22977068-22977103)
chr6 (253-288)||(23811299-23811334)
chr6 (215-257)||(2626079-2626121)
chr6 (215-257)||(22976982-22977024)
chr6 (215-257)||(23811378-23811420)
[»] chr1 (1 HSPs)
chr1 (215-257)||(47388427-47388469)
[»] scaffold0103 (2 HSPs)
scaffold0103 (253-288)||(11582-11617)
scaffold0103 (215-257)||(11661-11703)


Alignment Details
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 9941748 - 9941788
Alignment:
Q  20 caggctagtgcagagggtacatgtttggaccaccaaaaacc 60  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9941748 caggctagtgcagagggtacatgtttggaccaccaaaaacc 9941788  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 9942221 - 9942281
Alignment:
Q  156 tatacctattcccttatatatgaatgtttttgttttaatacattagactagtacgttactatt 218  Q
    ||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||||| ||||    
T  9942221 tatacctgttcccttata--tgaatgtttgtgttttaatacattagactagtacgttattatt 9942281  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 9941846 - 9941880
Alignment:
Q  118 taatctatttgctaaattcaaccacaattgatatt 152  Q
    |||||||||||||||||||||||||||||||||||    
T  9941846 taatctatttgctaaattcaaccacaattgatatt 9941880  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 42922286 - 42922328
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||    
T  42922286 tattaactcagtagaaagtctttggcaaattgaattatttgtt 42922328  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 3753406 - 3753448
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  3753406 tattagctcagtagaaagtgtttggcaaattgaattatttgtt 3753448  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 19252218 - 19252260
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  19252218 tattagctcagtagaaagtgtttggcaaattgaattatttgtt 19252260  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 19325402 - 19325444
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  19325402 tattagctcagtagaaagtgtttggcaaattgaattatttgtt 19325444  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 19252139 - 19252174
Alignment:
Q  253 ttgttcatgtaagttatgagttctctttatccatgc 288  Q
    ||||||||| ||||||||||||||||||||||||||    
T  19252139 ttgttcatggaagttatgagttctctttatccatgc 19252174  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 19325323 - 19325358
Alignment:
Q  253 ttgttcatgtaagttatgagttctctttatccatgc 288  Q
    ||||||||| ||||||||||||||||||||||||||    
T  19325323 ttgttcatggaagttatgagttctctttatccatgc 19325358  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 45287786 - 45287751
Alignment:
Q  253 ttgttcatgtaagttatgagttctctttatccatgc 288  Q
    ||||||||| ||||||||||||||||||||||||||    
T  45287786 ttgttcatggaagttatgagttctctttatccatgc 45287751  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 4802577 - 4802535
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  4802577 tattagctcagtagaaagtgtttggcaaattgaattatttgtt 4802535  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 4802656 - 4802621
Alignment:
Q  253 ttgttcatgtaagttatgagttctctttatccatgc 288  Q
    ||||||||| ||||||||||||||||||||||||||    
T  4802656 ttgttcatggaagttatgagttctctttatccatgc 4802621  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 30922376 - 30922334
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  30922376 tattagctcagtagaaagtgtttggcaaattgaattatttgtt 30922334  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 30922455 - 30922420
Alignment:
Q  253 ttgttcatgtaagttatgagttctctttatccatgc 288  Q
    ||||||||| ||||||||||||||||||||||||||    
T  30922455 ttgttcatggaagttatgagttctctttatccatgc 30922420  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 33652587 - 33652547
Alignment:
Q  217 ttagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    ||||||| |||| |||||||||||| |||||||||||||||    
T  33652587 ttagctcagtagtaagtgtttggcacattgaattatttgtt 33652547  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 34325404 - 34325446
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  34325404 tattagctcagtagaaagtgtttgacaaattgaattatttgtt 34325446  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 2626200 - 2626165
Alignment:
Q  253 ttgttcatgtaagttatgagttctctttatccatgc 288  Q
    ||||||||| ||||||||||||||||||||||||||    
T  2626200 ttgttcatggaagttatgagttctctttatccatgc 2626165  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Complemental strand, 22977103 - 22977068
Alignment:
Q  253 ttgttcatgtaagttatgagttctctttatccatgc 288  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22977103 ttgttcatggaagttatgagttctctttatccatgc 22977068  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 23811299 - 23811334
Alignment:
Q  253 ttgttcatgtaagttatgagttctctttatccatgc 288  Q
    ||||||||| ||||||||||||||||||||||||||    
T  23811299 ttgttcatggaagttatgagttctctttatccatgc 23811334  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 2626121 - 2626079
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    |||||||||  |||||||||||| |||||||||||||||||||    
T  2626121 tattagctcaatagaaagtgtttagcaaattgaattatttgtt 2626079  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 22977024 - 22976982
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    |||||||||  || |||||||||||||||||||||||||||||    
T  22977024 tattagctcaataaaaagtgtttggcaaattgaattatttgtt 22976982  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 23811378 - 23811420
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    |||||||||  || |||||||||||||||||||||||||||||    
T  23811378 tattagctcaataaaaagtgtttggcaaattgaattatttgtt 23811420  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 47388469 - 47388427
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  47388469 tattagctcagaagaaagtgtttggcaaattgaattatttgtt 47388427  T

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Target: scaffold0103 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 11582 - 11617
Alignment:
Q  253 ttgttcatgtaagttatgagttctctttatccatgc 288  Q
    ||||||||| ||||||||||||||||||||||||||    
T  11582 ttgttcatggaagttatgagttctctttatccatgc 11617  T

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Target: scaffold0103; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 11661 - 11703
Alignment:
Q  215 tattagctctgtagaaagtgtttggcaaattgaattatttgtt 257  Q
    |||||||||  |||||||||||| |||||||||||||||||||    
T  11661 tattagctcaatagaaagtgtttagcaaattgaattatttgtt 11703  T

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