View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_84 (Length: 259)
Name: NF19929_high_84
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_84 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 32065922 - 32065819
Alignment:
| Q |
137 |
atcacacccttctttaacttctaaacgtttagctaatcatgctactttaagcatcagtgcaagtgctgcagagaagaagaaggtgctaatcataaatacc |
236 |
Q |
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| T |
32065922 |
atcacacccttctttaacttctaaacgtttagctaatcatgctactttaagcatcagtgcaagtgctgcagagaagaagaaggtgctaatcataaatacc |
32065823 |
T |
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| Q |
237 |
aata |
240 |
Q |
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|||| |
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| T |
32065822 |
aata |
32065819 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 32066041 - 32065980
Alignment:
| Q |
18 |
accttgctcttcacttcaacctcttccaatctcctcccactttcacattcttgtactttgcg |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32066041 |
accttgctcttcacttcaacctcttccaatctcctcccactttcacattcttgtactttgcg |
32065980 |
T |
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