View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_9 (Length: 681)
Name: NF19929_high_9
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 243 - 641
Target Start/End: Complemental strand, 33858191 - 33857790
Alignment:
| Q |
243 |
aatcatatagttgaattagccacaactttgagtatgaactgaattaaca---tactcatatgcttgacccnnnnnnnncaacatgcttatatgaattaac |
339 |
Q |
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| T |
33858191 |
aatcatatagttgaattagccacaattttgagtataaactgaattaacaacatactcatatgcttgacccaaaaaaaacaacatgcttatatgaattaac |
33858092 |
T |
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| Q |
340 |
tacatttttgaacgtgattaatctggtgtgtcacatatgtattgtagatgaaataatattacattatgttagcaaatgcacacaacattaacatttctat |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33858091 |
tacatttttgaacgtgattaatctggtgtgtcacatatgtattgtagatgaaataatattacattatgttagcaaatgcacacagcattaacatttctat |
33857992 |
T |
|
| Q |
440 |
caaaattgtttaactgcgtaggtactgcaattagatttaaataggaaaagatgatatggaaaccaatgcaactnnnnnnnnnnnnnnnnnnnnnnntaat |
539 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33857991 |
caaaattgtttaactgcgtacgtactgcaattagatttaaataggaaaagatgatatggaaaccaatgcaactaaaaaatattaaaaaaactaaaataat |
33857892 |
T |
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| Q |
540 |
attccatatgcggttttttattagattatcccaaaatagttgtcaaaatatcatttatcgtcatgatatgcatgattttatggaaaaatgtgttaaaaga |
639 |
Q |
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| T |
33857891 |
attccatatgcggttttttattagattatcccaaaatagttgtcaaaatattatttatcgtcatgatatgcatgattttatggaaaaatgtgttaaaaga |
33857792 |
T |
|
| Q |
640 |
ac |
641 |
Q |
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|| |
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| T |
33857791 |
ac |
33857790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 33858445 - 33858237
Alignment:
| Q |
11 |
ttatactgttacaaacattcaaattattataattaacaaacatgatatatgttcatccatttcatattcattttcaatttatttgagatggagttgcatt |
110 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33858445 |
ttatactgttacaaaaattcaaattattataattaacaaacatgatatatgttcatccatttcatattcattttcaatttatttgagatggagttgcatt |
33858346 |
T |
|
| Q |
111 |
tacctttattggggctgagcatgtatatggtgtctccacccatccaatgccaccggggtcaggtgtacatattgatgaactgtgtttgtgaaaaatatat |
210 |
Q |
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| T |
33858345 |
tacctttattggggctgagcatgtatatggtgtctccacccatccaatgccaccggggtcaggtgtacatattgatgaactgtgtttgtgaaaaatatat |
33858246 |
T |
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| Q |
211 |
tttattact |
219 |
Q |
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||||||||| |
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| T |
33858245 |
tttattact |
33858237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 598
Target Start/End: Complemental strand, 39712415 - 39712378
Alignment:
| Q |
561 |
tagattatcccaaaatagttgtcaaaatatcatttatc |
598 |
Q |
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| T |
39712415 |
tagattatcacaaaatggttgtcaaaatatcatttatc |
39712378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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