View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_92 (Length: 248)
Name: NF19929_high_92
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_92 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 278404 - 278175
Alignment:
| Q |
1 |
tctggttcagaaactagtatttcacgttccgtttttcgggcctgcaaatttttgctagctagaacttgttcatcagattgtgttgtacatggagtgaatt |
100 |
Q |
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| T |
278404 |
tctggttcagaaactagtatttcacgttccgtttttcgggcctgcaaatttttgttagctagaacttgttcatcagattgtgttgtacatggagtgaatt |
278305 |
T |
|
| Q |
101 |
tggaataatctatggaaagacccatggaaatatagtcaaaagtggttactggattgttgttgaagcaacttgttgtggggaagaggttactggtatcaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
278304 |
tggaataatctatggaaagacccatggaaatatagtcaaaagtggttactggattgttgttgaaacaacttgttgtggggaagaggttactagtatcaga |
278205 |
T |
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| Q |
201 |
ggttgagctaggaacttgtgcagtaactat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
278204 |
ggttgagctaggaacttgtgcagtaactat |
278175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 41800263 - 41800363
Alignment:
| Q |
5 |
gttcagaaactagtatttcacgttccgtttttcgggcctgcaaatttttgctagctagaacttg--ttcatcagattgtgttgtacatggagtgaatttg |
102 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||| || || | || |||||| |||||||||||||| |
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| T |
41800263 |
gttcagaaactagtatttcacgttcc---ttttgggcctgcaaattcttggcagctagaacttgctctcgtcgggttcggttgtatatggagtgaatttg |
41800359 |
T |
|
| Q |
103 |
gaat |
106 |
Q |
| |
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|||| |
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|
| T |
41800360 |
gaat |
41800363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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