View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_95 (Length: 242)
Name: NF19929_high_95
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_95 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 55636019 - 55635793
Alignment:
| Q |
1 |
caataatttcaggttacaacatttcaaattttaattacatattcaaaataactacacaacaccaattcagcaccttttttcaataaaagtttaaattaga |
100 |
Q |
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| T |
55636019 |
caataatttcaggttacaacatttcaaattttaattacatattcaaaataactacacaacaccaattcagcaccttttttcaataaaagtttaaattaga |
55635920 |
T |
|
| Q |
101 |
tataattaggtagcaactaattataacaattcacaatacataatgacattatctgattatgcata-cgtctccagttacaatgcatgccacgacacgaag |
199 |
Q |
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| T |
55635919 |
tataattaggtagcaactaattataacaattcacaatacataatgacattacctgattatgcatatcatctccagttacaatgcatgccacggcacgaag |
55635820 |
T |
|
| Q |
200 |
tgcatgaaacagcactgaaggagatgg |
226 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
55635819 |
tgcaggaaacagcactgaaggagatgg |
55635793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 54861545 - 54861727
Alignment:
| Q |
5 |
aatttcaggttacaacatttcaaattttaattacatattcaaaataact-acacaacaccaattcagcaccttttttcaataaaag----tttaaattag |
99 |
Q |
| |
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|||||||||||| || ||||||||||||||||| || | |||||||||| ||||||||||||||||| | ||||| |||||||||| || |||||| |
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| T |
54861545 |
aatttcaggttataatatttcaaattttaattatatttccaaaataactaacacaacaccaattcagta-cttttctcaataaaaggtaaatttaattag |
54861643 |
T |
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| Q |
100 |
atata-attaggtagcaactaattataacaattcacaatacataatgacattatctgattatgcata-cgtctccagttacaat |
181 |
Q |
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| T |
54861644 |
aaatacattaggttgcagctgattataacaatacacaatccattatgacattacctgagtctgcatattgtctccagttacaat |
54861727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 54627704 - 54627570
Alignment:
| Q |
94 |
aattagatataattaggtagcaactaattataacaattcacaatacataatgacattatctgattatgcata-cgtctccagttacaatgcatgccacga |
192 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||| |||| ||| |||||| || |||| | |||||| | ||||||| |||||| | |||| |
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| T |
54627704 |
aattagaaataattaggtagcagctaattataacaattcccaatccattatgacaatacctgagtctgcatatcatctccagatacaatatttcccactg |
54627605 |
T |
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| Q |
193 |
cacgaagtgcatgaaacagcactgaaggagatggt |
227 |
Q |
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||||||||| |||||||| ||||| |||||||| |
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| T |
54627604 |
tgcgaagtgcaggaaacagcgctgaaagagatggt |
54627570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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