View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_high_99 (Length: 240)
Name: NF19929_high_99
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_high_99 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 45039390 - 45039167
Alignment:
| Q |
1 |
tacaagcaattacataactacattagtctctctcttagaaaacccaccatgagagttgttagagaacgattataaagtacaaggacatctacttaaaatg |
100 |
Q |
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| T |
45039390 |
tacaagcaattacataactacattagtctctctcttagaaaatccaccatgagagttgttagagaacgatcataaagtacaaggacatctacttaaaatg |
45039291 |
T |
|
| Q |
101 |
gaacctacctctattctattattgactcataggttaaaagagttcacaacactctttgaatcaagagtaaaaataacttgtttgaactctactttctaca |
200 |
Q |
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| T |
45039290 |
gaacctacctctattctattattgactcataggttaaaagagttcacagcactctttgaatcaagagtaaaaataacttgtttgaactctaattcctaca |
45039191 |
T |
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| Q |
201 |
ttcactcgatgcctattaataagc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
45039190 |
ttcactcgatgcctattaataagc |
45039167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 191
Target Start/End: Complemental strand, 43805037 - 43804903
Alignment:
| Q |
54 |
agttgttagagaacgattataaagtacaaggacatctacttaaaatggaacctacctctattctattatt-gactcataggttaaaagagttcacaacac |
152 |
Q |
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| T |
43805037 |
agttgttatagaacgatgataaaatacta---catctacttaaaatgcaacctatctcgattctatcatttgactaacaagttaaaac-gttcacaacag |
43804942 |
T |
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| Q |
153 |
tctttgaatcaagagtaaaaataacttgtttgaactcta |
191 |
Q |
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| T |
43804941 |
tctttgaatctaaagtaaagataactggtttgaactcta |
43804903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 12158769 - 12158715
Alignment:
| Q |
137 |
aaagagttcacaacactctttgaatcaagagtaaaaataacttgtttgaactcta |
191 |
Q |
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| T |
12158769 |
aaagagtccacaacactctttgaatctaaagtaaagataactttgttgaactcta |
12158715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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