View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_1 (Length: 859)
Name: NF19929_low_1
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 716; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 91 - 854
Target Start/End: Complemental strand, 2786927 - 2786164
Alignment:
| Q |
91 |
tgtgtgcactcactcccttttgtttttgcgttcttgtttcaaactttcaacaccatggccgagaagaaggtcatcgttgtcgtcgaaggcaccgctgcga |
190 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
2786927 |
tgtgtgcactcactctcttttgtttttgcgctcttgtttcaaactttcaacaccatggcggagaagaaggtcatcgttgtcgtcgaaagcaccgctgcga |
2786828 |
T |
|
| Q |
191 |
tgggaccgcactaggatactcttcaagtggattatctcaacaaaatcgccaagtccctttgtgggaacgaacctgctgtttccaactctcagtttgccct |
290 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2786827 |
tgggaccgcactgggatactcttcaagtggattatctcaacaaaatcgtcaagtccctttgtgggaacgaacctgctgtttccaacgctcagtttgccct |
2786728 |
T |
|
| Q |
291 |
agtcacctatcatactcatggcatttatgctcctgttctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctata |
390 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786727 |
agtcacctatcatactcatggcatttattctcctgttctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctata |
2786628 |
T |
|
| Q |
391 |
tccttttccggtggtggttttaatgacaccgctgtcgctgaagggcttgctgaagctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaa |
490 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786627 |
tccttttccggtggtggtttaaatgacaccgctgtcgctgaagggcttgctgaagctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaa |
2786528 |
T |
|
| Q |
491 |
agaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattga |
590 |
Q |
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| T |
2786527 |
agaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattga |
2786428 |
T |
|
| Q |
591 |
ctcggaatcaggtaaccagttttatgatgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttccc |
690 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786427 |
ctcggaatcaggtaaccagttttatgatgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttccc |
2786328 |
T |
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| Q |
691 |
aaaatcaaagccatctacaatgctggagctgtcaatccacctgttgatgcgaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactg |
790 |
Q |
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| T |
2786327 |
aaaatcaaagccatctacaatgctggagctgtcaatccaccggttgatgctaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactg |
2786228 |
T |
|
| Q |
791 |
ccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgatgatgt |
854 |
Q |
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| T |
2786227 |
ccttgagtccttccggaacaacaaacttgccttcaaatcaaattcatgttaaagttgacgatgt |
2786164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 328 - 453
Target Start/End: Original strand, 22515971 - 22516096
Alignment:
| Q |
328 |
ctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctatatccttttccggtggtggttttaatgacaccgctgtcg |
427 |
Q |
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|||||||||||| |||||||||||||||| ||||| ||||||||| | ||| || ||||||| | ||||| |||||||||||||||||| | ||| | | |
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| T |
22515971 |
ctcgtgcaacgtactggctggacaagagacccagatgttttcttacagtggctagaatctataccattttctggtggtggttttaatgacgcagctattg |
22516070 |
T |
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| Q |
428 |
ctgaagggcttgctgaagctttgatg |
453 |
Q |
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| T |
22516071 |
ctgaagggcttgctgaagctctgatg |
22516096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 453 - 569
Target Start/End: Original strand, 22517146 - 22517262
Alignment:
| Q |
453 |
gatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatccattgaag |
552 |
Q |
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||||||| |||| |||||||||| | ||| ||||| ||||||| |||| | ||||||||||| ||||||||||||||||||||||| |||||| || |
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| T |
22517146 |
gatgttccccccttctcaaagtggaggcctaaatcagcagaatgtggatacgaacatgcactgtatccttgtggcagccagtaatccttacccattgcag |
22517245 |
T |
|
| Q |
553 |
agaccaatatatgttcc |
569 |
Q |
| |
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| T |
22517246 |
acaccggtatatgttcc |
22517262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 654 - 713
Target Start/End: Original strand, 22517462 - 22517521
Alignment:
| Q |
654 |
tatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgc |
713 |
Q |
| |
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|||||||||||| ||| ||||||||| | | ||||||||||| ||||||||||||||||| |
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| T |
22517462 |
tatttctctatcggtcgtctgcccaaaacaacttcccaaaattaaagccatctacaatgc |
22517521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 648
Target Start/End: Original strand, 22517280 - 22517356
Alignment:
| Q |
572 |
agaagaatgaatccattgactcggaatcaggt-aaccagttttatgatgctgaagatgttgctaaagcatttccgcag |
648 |
Q |
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|||||| ||||||||||||||| || || || |||||||| ||||||||||||| |||||||||||| ||||||||| |
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| T |
22517280 |
agaagactgaatccattgactca-aaccaagtgaaccagttatatgatgctgaagctgttgctaaagcgtttccgcag |
22517356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 750 - 799
Target Start/End: Original strand, 22518232 - 22518281
Alignment:
| Q |
750 |
tcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtc |
799 |
Q |
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|||| |||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
22518232 |
tcttattttaatatcagaaggttttagggaagcccgcagtgccttgagtc |
22518281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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