View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19929_low_105 (Length: 238)
Name: NF19929_low_105
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_105 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37302318 - 37302539
Alignment:
| Q |
1 |
tccaaataacaatttt-tcttaaatttatgacgtttaactacaccaaataataccgatcttcgaacagtagtacagttctactcattataaacgagatac |
99 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37302318 |
tccaaataacatttttttcttaaatttatgacgtttaactgcaccaaataataccgatcttcgaacagtagtacagttctactcattataaacgagatac |
37302417 |
T |
|
| Q |
100 |
aattctagtggacgatacctcaacagcaatatcgaattatccaataataaccttttcccatctgtcaagttggcttttaattgatcatatatcctccggc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37302418 |
aattctagtggacgatacctcaacagcaatatcgaattatccaataataaccttttcccatctgtcaagttggcttttaattgatcatatatcctccggc |
37302517 |
T |
|
| Q |
200 |
aacctcactaaatgctcactcc |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37302518 |
aacctcactaaatgctcactcc |
37302539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University