View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_107 (Length: 233)
Name: NF19929_low_107
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_107 |
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| [»] scaffold1750 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 4714290 - 4714077
Alignment:
| Q |
1 |
gatgattcataaatcagctatattgaggtttttgatgaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgattccaaatataacc |
100 |
Q |
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| T |
4714290 |
gatgattcataaatcagctatattgaggtttttgatgaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgattccaaatataacc |
4714191 |
T |
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| Q |
101 |
ggccaatagaaatcaaatgaatgttgacatgactgagagagcgcatggcagtgagatgagaacggtgagagttgtaggtcttggtggggaggacgagaga |
200 |
Q |
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| T |
4714190 |
ggccaatagaaatcaaatgaatgttgacatgactgagagagcgcatggcagtgagatgagaacggtgagagttgtaggtcttggtggggaggatgagaga |
4714091 |
T |
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| Q |
201 |
gatgaggaatagga |
214 |
Q |
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| T |
4714090 |
gatgaggaatagga |
4714077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 4704132 - 4704015
Alignment:
| Q |
8 |
cataaatcagctatattgaggtttttgatgaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgattccaaatataaccggccaat |
107 |
Q |
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| T |
4704132 |
cataaatcaactatattaaggtctttgatgaatatgtgatgtgagtcgcgcttttg--actgatcttagcaaaatgtgattccaaatataatcggccaat |
4704035 |
T |
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| Q |
108 |
agaaatcaaatgaatgttga |
127 |
Q |
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| T |
4704034 |
agaaatcaaatgaatgttga |
4704015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 4701737 - 4701656
Alignment:
| Q |
132 |
actgagagagcgcatggcagtgagatgagaacggtgagagttgtaggtcttggtggggaggacgagagagatgaggaatagg |
213 |
Q |
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| T |
4701737 |
actgaaagagcgcatgacaatgagatgagaacggagagagtcgtagatcttggtagggaggacaagagagatcagggatagg |
4701656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 250 - 200
Alignment:
| Q |
37 |
gaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgat |
87 |
Q |
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| T |
250 |
gaagatgtgatgtgaatctcacttctgtgattgttcttagtctaatgtgat |
200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 20934963 - 20934913
Alignment:
| Q |
37 |
gaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgat |
87 |
Q |
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| T |
20934963 |
gaagatgtgatgtgaatctcacttatgtgattgttcttagtctaatgtgat |
20934913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 32976437 - 32976387
Alignment:
| Q |
37 |
gaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgat |
87 |
Q |
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| T |
32976437 |
gaagatgtgatgtgaatctcacttctgtgattgttcttagtctaatgtgat |
32976387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 20306699 - 20306649
Alignment:
| Q |
37 |
gaagatgtgatgtgaatctcacttttgtgactgatcttagcataatgtgat |
87 |
Q |
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| T |
20306699 |
gaagatgtgatgtgaatctcacttctgtgattgttcttagtctaatgtgat |
20306649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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