View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_111 (Length: 229)

Name: NF19929_low_111
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_111
NF19929_low_111
[»] chr4 (4 HSPs)
chr4 (83-191)||(6800276-6800384)
chr4 (58-145)||(6804688-6804774)
chr4 (170-213)||(6800228-6800271)
chr4 (140-199)||(1393073-1393132)
[»] chr5 (4 HSPs)
chr5 (106-213)||(41361370-41361477)
chr5 (61-209)||(34153982-34154130)
chr5 (85-201)||(41038126-41038243)
chr5 (14-91)||(795362-795438)
[»] chr2 (1 HSPs)
chr2 (83-213)||(13310504-13310635)
[»] chr3 (1 HSPs)
chr3 (139-190)||(53833602-53833653)
[»] chr1 (3 HSPs)
chr1 (142-204)||(2114900-2114962)
chr1 (146-206)||(21431011-21431071)
chr1 (15-49)||(2079225-2079259)
[»] chr8 (1 HSPs)
chr8 (14-113)||(15051450-15051547)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 6800384 - 6800276
Alignment:
Q  83 tgtgcccttgctatttcacgtgcagtgctagtgagaagagctgttgtatactggagagcactagttttaaggccaactgcatcaggcgattgacctgtgg 182  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  6800384 tgtgcccttgctatttcacgtgcagtgttagtgaggagagctgttgtatcctggagagcactagtcttgaggccaactgcatcaggtgattgacctgtgg 6800285  T
Q  183 cggcgaaat 191  Q
    |||||||||    
T  6800284 cggcgaaat 6800276  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 6804774 - 6804688
Alignment:
Q  58 ctttgagcatccaaatagatgtttctgtgcccttgctatttcacgtgcagtgctagtgagaagagctgttgtatactggagagcacta 145  Q
    |||| ||||||||| ||| |||| | |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  6804774 ctttcagcatccaa-tagttgttcccgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtattctggagagcacta 6804688  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 6800271 - 6800228
Alignment:
Q  170 gattgacctgtggcggcgaaatgctcttaagcccagtgcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  6800271 gattgacctgtggcggcgaaatgctcttaagcccagtgcgtttg 6800228  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 1393132 - 1393073
Alignment:
Q  140 gcactagttttaaggccaactgcatcaggcgattgacctgtggcggcgaaatgctcttaa 199  Q
    ||||||| ||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||||    
T  1393132 gcactagctttgaggccaactgcattaggtgattgacatgtggtggcgaaatgctcttaa 1393073  T

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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 41361370 - 41361477
Alignment:
Q  106 agtgctagtgagaagagctgttgtatactggagagcactagttttaaggccaactgcatcaggcgattgacctgtggcggcgaaatgctcttaagcccag 205  Q
    |||| ||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41361370 agtgttagtgagaagagctgttgtatcctggagagcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaatgctcttaagcccag 41361469  T
Q  206 tgcatttg 213  Q
    ||| ||||    
T  41361470 tgcgtttg 41361477  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 34154130 - 34153982
Alignment:
Q  61 tgagcatccaaatagatgtttctgtgcccttgctatttcacgtgcagtgctagtgagaagag-ctgttgtatactggagagcactagttttaaggccaac 159  Q
    ||||||||||| |||  ||| |||||||||||||  ||||||||||||| |||||| ||| | ||||||||| |||||||||||||| ||| ||||||||    
T  34154130 tgagcatccaa-tagtggttcctgtgcccttgctggttcacgtgcagtgttagtgaaaagtggctgttgtatcctggagagcactagctttgaggccaac 34154032  T
Q  160 tgcatcaggcgattgacctgtggcggcgaaatgctcttaagcccagtgca 209  Q
    |||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  34154031 tgcatcaggtcattgacctgtggtggcgaaatgctcttaagcccagtgca 34153982  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 41038243 - 41038126
Alignment:
Q  85 tgcccttgctatttcacgtgcagtgctagtgagaagag-ctgttgtatactggagagcactagttttaaggccaactgcatcaggcgattgacctgtggc 183  Q
    ||||||||||| || |||||||||| ||| |||||| | ||||||||| ||| |||||||||| ||| |||||||||| ||||||  |||||| |||||     
T  41038243 tgcccttgctagttaacgtgcagtgttagcgagaagtggctgttgtatcctgaagagcactagctttgaggccaactgtatcaggtcattgacatgtggt 41038144  T
Q  184 ggcgaaatgctcttaagc 201  Q
    ||||||||||||||||||    
T  41038143 ggcgaaatgctcttaagc 41038126  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 795438 - 795362
Alignment:
Q  14 aacacttgtaatcatacataattggtataaacatt-ttttggttcctttgagcatccaaatagatgtttctgtgccctt 91  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||  ||| ||||| ||||| ||||||| |||||||    
T  795438 aacacttataatcatacataattggtataaacattgttttggttcc-ctgatcatcc-aatagttgtttctctgccctt 795362  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 13310635 - 13310504
Alignment:
Q  83 tgtgcccttgctatttcacgtgcagtgctagtgagaagag-ctgttgtatactggagagcactagttttaaggccaactgcatcaggcgattgacctgtg 181  Q
    ||||||||| ||| |||||||| |||| |||||||| | | ||||| ||| || |||||| |||| ||| ||||||||||||||||| ||||||||||||    
T  13310635 tgtgcccttactaattcacgtgtagtgttagtgagaggtggctgttttatcctagagagcgctagctttgaggccaactgcatcaggtgattgacctgtg 13310536  T
Q  182 gcggcgaaatgctcttaagcccagtgcatttg 213  Q
    | || |||||||||||||||||| | ||||||    
T  13310535 gtggtgaaatgctcttaagcccaatacatttg 13310504  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 53833602 - 53833653
Alignment:
Q  139 agcactagttttaaggccaactgcatcaggcgattgacctgtggcggcgaaa 190  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||||||    
T  53833602 agcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaa 53833653  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 2114962 - 2114900
Alignment:
Q  142 actagttttaaggccaactgcatcaggcgattgacctgtggcggcgaaatgctcttaagccca 204  Q
    ||||| ||| ||| ||||||||||||||||||||| | || ||||||||||||||||||||||    
T  2114962 actagctttgaggtcaactgcatcaggcgattgacatatgtcggcgaaatgctcttaagccca 2114900  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 21431071 - 21431011
Alignment:
Q  146 gttttaaggccaactgcatcaggcgattgacctgtggcggcgaaatgctcttaagcccagt 206  Q
    ||||| |||||||||||||||||  |||||||||||  | ||||||||||||||| |||||    
T  21431071 gttttgaggccaactgcatcaggtcattgacctgtgatgacgaaatgctcttaagtccagt 21431011  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 2079259 - 2079225
Alignment:
Q  15 acacttgtaatcatacataattggtataaacattt 49  Q
    |||||| ||||||||||||||||||||||||||||    
T  2079259 acacttataatcatacataattggtataaacattt 2079225  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 15051450 - 15051547
Alignment:
Q  14 aacacttgtaatcatacataattggtataaacattttttggttcctttgagcatccaaatagatgtttctgtgcccttgctatttcacgtgcagtgctag 113  Q
    ||||||| |||||||||||||| || |||||||||||||  |||| ||||||||||| | ||  ||||||| | |||||||| | ||||||| |||||||    
T  15051450 aacacttataatcatacataatgggaataaacatttttt-tttcccttgagcatccata-agtggtttctgagaccttgctaatccacgtgcggtgctag 15051547  T

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