View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_113 (Length: 219)
Name: NF19929_low_113
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_113 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 27273663 - 27273477
Alignment:
| Q |
16 |
ttctattttcctttcttttcatacaagcgtttatttacttaggttagacataacaagcagagcataacatggctttgagagaattaggatttgaattcaa |
115 |
Q |
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| T |
27273663 |
ttctattttcctttcttttcatacaagcgtttatttatttaggttagacataacaagtagagcataacatggctttgagagaattaggatttgaattcaa |
27273564 |
T |
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| Q |
116 |
ggtgttttgactagatttaatttgattcttgcaattttcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatc |
202 |
Q |
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| T |
27273563 |
ggtgttttgactagatttaatttgattattgcaattctcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactatc |
27273477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 567 - 382
Alignment:
| Q |
16 |
ttctattttcctttcttttcatacaagcgtttatttacttaggttagacataacaagcagagcataacatggctttgagagaattaggatttgaattcaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
567 |
ttctattttcctttcttttcatacaagcgtttatttatttaggttagacataacaagtagagcataacatggctttgagagaattaggatttgaatataa |
468 |
T |
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| Q |
116 |
ggtgttttgactagatttaatttgattcttgcaattttcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactat |
201 |
Q |
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| T |
467 |
ggtgttttgactagatttaatttgattattgcaattttcaaatgtgaaacgtatgcttgctcccaacaactacaacgaataactat |
382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 6078 - 5893
Alignment:
| Q |
16 |
ttctattttcctttcttttcatacaagcgtttatttacttaggttagacataacaagcagagcataacatggctttgagagaattaggatttgaattcaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
6078 |
ttctattttcctttcttttcatacaagcgtttatttatttaggttagacataacaagtagagcataacatggctttgagagaattaggatttgaatataa |
5979 |
T |
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| Q |
116 |
ggtgttttgactagatttaatttgattcttgcaattttcaaatgtgtaacgtatgcttgctcccaacaactacaacgaataactat |
201 |
Q |
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| T |
5978 |
ggtgttttgactagatttaatttgattattgcaattttcaaatgtgaaacgtatgcttgctcccaacaactacaacgaataactat |
5893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 13550860 - 13550740
Alignment:
| Q |
74 |
agagcataacatg---gctttgagagaattaggatttgaattcaaggtgttttgactagatttaatttgattcttgcaattttcaaatgtgtaacgtatg |
170 |
Q |
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||||||||||||| ||||||||||||||||||| |||||| |||||||||| || |||||||||||||| |||||||||||||||||||||| ||| |
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| T |
13550860 |
agagcataacatgcatgctttgagagaattaggatctgaattgaaggtgtttttacatgatttaatttgattattgcaattttcaaatgtgtaacagatg |
13550761 |
T |
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| Q |
171 |
c-ttgctcccaacaactacaa |
190 |
Q |
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| T |
13550760 |
ctttgctcccaacaactacaa |
13550740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 13550938 - 13550883
Alignment:
| Q |
16 |
ttctattttcctttcttttcatacaagcgtttatttacttaggttagacataacaa |
71 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
13550938 |
ttctattttcctttcttttcatacaagtttttatttatttaggttagacataacaa |
13550883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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