View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_114 (Length: 219)
Name: NF19929_low_114
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_114 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 6521346 - 6521532
Alignment:
| Q |
15 |
attctacattttaaagcttgaaacatccataattattgtttgttatttgttatacaatgtcttcatttctttgttctctccttctcatcttcattttcac |
114 |
Q |
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| T |
6521346 |
attccacattttaaagcttgaaacatccataattattgtttgttatttgttatacaatgtcttcatttctttgttctctccttctcattttcattttcac |
6521445 |
T |
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| Q |
115 |
atctcaactcaccatagctaccactgacactgcaaacaaattccaatacttctgtgatcaaaataacgatggtggtaactacacaac |
201 |
Q |
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| T |
6521446 |
atctcaactcaccatagctaccactgacactgcaaacaaattccaatacttctgtgatcaaaataatgatggtggtaactacccaac |
6521532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 6513290 - 6513103
Alignment:
| Q |
15 |
attctacattttaaagcttgaaacatccataattattgtttgttatttgttatacaatgtcttcatttctttgttctctccttctcatcttcattttcac |
114 |
Q |
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| T |
6513290 |
attccacattttaatgcttcaaacatccataattattgtctgttatttcttaaacaatgtcttcatttctttgttctttccttctcatattcattttcac |
6513191 |
T |
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| Q |
115 |
atctcaactcaccatagctaccactgacactgcaaacaaattccaatacttctgtgatcaaaataacgatggtggtaactacacaacc |
202 |
Q |
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| T |
6513190 |
atctcaactcaccacagccaacattaacaatgataacaaattgcaatacttctgtgatcaaaataacgatggtggtaactacacaacc |
6513103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 6507389 - 6507202
Alignment:
| Q |
15 |
attctacattttaaagcttgaaacatccataattattgtttgttatttgttatacaatgtcttcatttctttgttctctccttctcatcttcattttcac |
114 |
Q |
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| T |
6507389 |
attccacattttaaagcttgaaacatccataattgttgtgtgttatttgttatacaatgtcttcatttctttgttctctccttctcacattcattttcac |
6507290 |
T |
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| Q |
115 |
atctcaactcaccatagctaccactgacactgcaaacaaattccaatacttctgtgatcaaaataacgatggtggtaactacacaacc |
202 |
Q |
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| T |
6507289 |
atctcaaatcagcacagctaccactgacgctacaggaaaattccgatacatttgtgatcaaggtaacgatgatggtaactacacaacc |
6507202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 6517681 - 6517502
Alignment:
| Q |
23 |
ttttaaagcttgaaacatccataattattgtttgttatttgttatacaatgtcttcatttctttgttctctccttctcatcttcattttcacatctcaac |
122 |
Q |
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| T |
6517681 |
ttttaaagcttgaaacatcaataattattgtttgttatttgttaaacaatgtcttcatttctttgttctctccttctcattttcattttcacatctcaac |
6517582 |
T |
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| Q |
123 |
tcaccatagctaccactgacactgcaaacaaattccaatacttctgtgatcaaaataacgatggtggtaactacacaacc |
202 |
Q |
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| T |
6517581 |
tcaccacagcagacgttgaccaaggtaagaatttccaatacttctgtgatcaaaataacgatggtggtatctacacaacc |
6517502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 1414 - 1227
Alignment:
| Q |
15 |
attctacattttaaagcttgaaacatccataattattgtttgttatttgttatacaatgtcttcatttctttgttctctccttctcatcttcattttcac |
114 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1414 |
attccacattttaaagcttgaaacatccataattgttgtgtgttatttgttatacaatgtcttcatttctttgttctctccttctcacattcattttcac |
1315 |
T |
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| Q |
115 |
atctcaactcaccatagctaccactgacactgcaaacaaattccaatacttctgtgatcaaaataacgatggtggtaactacacaacc |
202 |
Q |
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| T |
1314 |
atctcaaatcagcacagctaccactgacgctacaggaaaattccgatacatttgtgatcaaggtaacgatgatggtaactacacaacc |
1227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 9068 - 8881
Alignment:
| Q |
15 |
attctacattttaaagcttgaaacatccataattattgtttgttatttgttatacaatgtcttcatttctttgttctctccttctcatcttcattttcac |
114 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9068 |
attccacattttaaagcttgaaacatccataattgttgtgtgttatttgttatacaatgtcttcatttctttgttctctccttctcacattcattttcac |
8969 |
T |
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| Q |
115 |
atctcaactcaccatagctaccactgacactgcaaacaaattccaatacttctgtgatcaaaataacgatggtggtaactacacaacc |
202 |
Q |
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||||||| ||| || ||||||||||||| || || ||||||| |||| | ||||||||| |||||||| |||||||||||||||| |
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| T |
8968 |
atctcaaatcagcacagctaccactgacgctacaggaaaattccgatacatttgtgatcaaggtaacgatgatggtaactacacaacc |
8881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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