View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_13 (Length: 636)

Name: NF19929_low_13
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_13
NF19929_low_13
[»] chr4 (12 HSPs)
chr4 (12-487)||(35334985-35335460)
chr4 (9-241)||(35335492-35335727)
chr4 (11-223)||(35335378-35335593)
chr4 (362-452)||(16592167-16592257)
chr4 (351-406)||(35327002-35327057)
chr4 (362-437)||(16602671-16602746)
chr4 (368-401)||(5342486-5342519)
chr4 (12-57)||(16592051-16592096)
chr4 (12-57)||(16602501-16602546)
chr4 (123-189)||(16592030-16592096)
chr4 (103-189)||(16602460-16602546)
chr4 (587-623)||(35334849-35334885)
[»] chr3 (1 HSPs)
chr3 (354-419)||(3175390-3175455)
[»] chr5 (1 HSPs)
chr5 (354-400)||(20964465-20964511)
[»] chr8 (1 HSPs)
chr8 (368-400)||(38542112-38542144)


Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 12 - 487
Target Start/End: Complemental strand, 35335460 - 35334985
Alignment:
Q  12 catcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctgttcacaaacatgttccagtacatcctc 111  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35335460 catcaacaccctcctactcattcccctgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctgttcacaaacatgttccagtacatcctc 35335361  T
Q  112 ctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaacacatccccaccctcctgctcacgcccc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  35335360 ctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcgcctattcaaccaccaacacatcaccaccctcctgctcacgcccc 35335261  T
Q  212 tgctcacaaacacattccaattcaccctccattccacgcccatgtacctactaaatctccaactcccaaccctcacccccaccatcatcacactcctgct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35335260 tgctcacaaacacattccaattcaccctccattccacgcccatgtacctactaaatctccaactcccaaccctcacccccgccatcatcacactcctgct 35335161  T
Q  312 cttgcccctgctcacacaccactgcgttcaattttccatcctagaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggag 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35335160 cttgcccctgctcacacaccactgcgttcaattttccatcctagaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgctggag 35335061  T
Q  412 gtgacacccttttgggtgctacatctataattggtttgtctcttaactttcatgtttgctttgttctttcatatca 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35335060 gtgacacccttttgggtgctacatctataattggtttgtctcttaactttcatgattgctttgttctttcatatca 35334985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 35335727 - 35335492
Alignment:
Q  9 catcatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctgttcacaaacatgttccagtacatc 108  Q
    ||||||||||| |||||||||||  ||| ||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  35335727 catcatcaacatcctcctgctcacgcccctgttcaacctccaacacatcaccaccactctcctgctcatgcccctgttcacaaacatgttccagttcatc 35335628  T
Q  109 ctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaacacatccc---caccctcctgctca 205  Q
    |||||| |||||| ||||||||||| ||||||   ||||||| | |||   ||||| ||||||||||||| |||||||||| |   ||| ||||||||||    
T  35335627 ctcctcaccatgctaaacctccaacccatcaccgtcatcaacacactcctgctcattcccctattcaacctccaacacatcgccatcactctcctgctca 35335528  T
Q  206 cgcccctgctcacaaacacattccaattcaccctcc 241  Q
     || |||  |||||||||  ||||| |||| |||||    
T  35335527 tgctcctattcacaaacatgttccagttcatcctcc 35335492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 35335593 - 35335378
Alignment:
Q  11 tcatcaacaccctcctgctcattcccttgttcaacctccaacgcatcaccaccagcctcctgctcatgcccctgttcacaaacatgttccagtacatcct 110  Q
    |||||||||| ||||||||||||||| | ||||||||||||| |||| ||| ||  ||||||||||||| ||| ||||||||||||||||||| ||||||    
T  35335593 tcatcaacacactcctgctcattcccctattcaacctccaacacatcgccatcactctcctgctcatgctcctattcacaaacatgttccagttcatcct 35335494  T
Q  111 cctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaacacatccccac---cctcctgctcacg 207  Q
    ||||  ||||| ||||||||||| |||||   |||||||| |||||  |||||| ||||| ||||||| ||||| |||| ||||   ||||||||||| |    
T  35335493 cctcatcatgctaaacctccaacccatcatcgccatcaacaccctcctactcattcccctgttcaacctccaacgcatcaccaccagcctcctgctcatg 35335394  T
Q  208 cccctgctcacaaaca 223  Q
    |||||| |||||||||    
T  35335393 cccctgttcacaaaca 35335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 362 - 452
Target Start/End: Original strand, 16592167 - 16592257
Alignment:
Q  362 aatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacccttttgggtgctacatctataattggtttgtct 452  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| |||| ||||||||||| |  |||||||||| | | ||||||||||    
T  16592167 aatagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgacaccctttcgaatgctacatctcttaatggtttgtct 16592257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 35327057 - 35327002
Alignment:
Q  351 cctagaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgc 406  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  35327057 cctagaagctttatagctgttcaaggtgttgtttatgtcaaatcttgcaagtatgc 35327002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 16602671 - 16602746
Alignment:
Q  362 aatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacccttttgggtgctacatct 437  Q
    |||||||||| |||||||||||||||||||||| ||||||||||| |||| ||| ||||||| |  ||||||||||    
T  16602671 aatagctgttgaaggtgttgtttatgtcaaatcatgcaagcatgctggagttgaaaccctttcgaatgctacatct 16602746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 368 - 401
Target Start/End: Original strand, 5342486 - 5342519
Alignment:
Q  368 tgttcaaggtgttgtttatgtcaaatcttgcaag 401  Q
    ||||||||||||||||||||||||||||||||||    
T  5342486 tgttcaaggtgttgtttatgtcaaatcttgcaag 5342519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 16592051 - 16592096
Alignment:
Q  12 catcaacaccctcctgctcattcccttgttcaacctccaacgcatc 57  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  16592051 catcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16592096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 16602501 - 16602546
Alignment:
Q  12 catcaacaccctcctgctcattcccttgttcaacctccaacgcatc 57  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  16602501 catcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16602546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 16592030 - 16592096
Alignment:
Q  123 aaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaacacatc 189  Q
    ||||||||||| |||||| ||||||||| |||||   ||||||||||| ||||||| ||||| ||||    
T  16592030 aaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16592096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 16602460 - 16602546
Alignment:
Q  103 tacatcctcctcgccatgcaaaacctccaactcatcacaaccatcaacgccctctaactcatgcccctattcaaccaccaacacatc 189  Q
    |||| ||| ||| |||||| ||||||||||| |||| | ||||||||| |||||   ||||||||||| ||||||| ||||| ||||    
T  16602460 tacacccttctcaccatgctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttcaacctccaacccatc 16602546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 623
Target Start/End: Complemental strand, 35334885 - 35334849
Alignment:
Q  587 aataaagttgcatgattatcgataatggacatatttt 623  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  35334885 aataaagttgcatgattaccgagaatggacatatttt 35334849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 3175455 - 3175390
Alignment:
Q  354 agaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaagcatgccggaggtgacacc 419  Q
    |||||||| ||||||||| |||||||||||||||||||||| ||||| ||| |||| | |||||||    
T  3175455 agaagcttgatagctgttgaaggtgttgtttatgtcaaatcatgcaaccataccggtgttgacacc 3175390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 400
Target Start/End: Original strand, 20964465 - 20964511
Alignment:
Q  354 agaagcttaatagctgttcaaggtgttgtttatgtcaaatcttgcaa 400  Q
    |||||||| |||| |||| |||| |||||||||||||||||||||||    
T  20964465 agaagcttgatagttgttgaaggagttgtttatgtcaaatcttgcaa 20964511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 400
Target Start/End: Complemental strand, 38542144 - 38542112
Alignment:
Q  368 tgttcaaggtgttgtttatgtcaaatcttgcaa 400  Q
    ||||| |||||||||||||||||||||||||||    
T  38542144 tgttcgaggtgttgtttatgtcaaatcttgcaa 38542112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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