View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19929_low_17 (Length: 545)

Name: NF19929_low_17
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19929_low_17
NF19929_low_17
[»] chr8 (4 HSPs)
chr8 (1-432)||(15190327-15190758)
chr8 (427-542)||(15195735-15195850)
chr8 (1-248)||(15744114-15744361)
chr8 (190-262)||(34174836-34174908)
[»] chr6 (1 HSPs)
chr6 (170-252)||(11969636-11969718)
[»] chr4 (8 HSPs)
chr4 (316-431)||(7629167-7629285)
chr4 (492-542)||(8999365-8999415)
chr4 (28-156)||(7637891-7638019)
chr4 (359-431)||(7606782-7606854)
chr4 (316-431)||(7615778-7615896)
chr4 (316-431)||(7637613-7637731)
chr4 (316-431)||(7655595-7655710)
chr4 (201-253)||(7399197-7399249)
[»] chr7 (4 HSPs)
chr7 (28-156)||(8935268-8935396)
chr7 (25-156)||(8934324-8934455)
chr7 (78-156)||(8929922-8930000)
chr7 (316-431)||(8935556-8935674)
[»] chr3 (3 HSPs)
chr3 (28-252)||(8103204-8103428)
chr3 (377-428)||(8103025-8103076)
chr3 (385-433)||(40146913-40146961)
[»] scaffold0190 (1 HSPs)
scaffold0190 (193-252)||(5160-5219)


Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 15190327 - 15190758
Alignment:
Q  1 cttgcattctttccaccctttgctggtcgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactct 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  15190327 cttgcattctttccaccctttactggtcgtctcgaaattacagaacacgaagataacactatttcgtgttcccttgcatgcaaaaatgctggtgcactct 15190426  T
Q  101 ttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttccgttttccactccttctttccacttaacggagttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15190427 ttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttcctttttccactccttctttccacttaacggagttat 15190526  T
Q  201 aaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggtacttttgttagttggacaatgaaccatgtagtccttgat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15190527 aaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggtacttttgttagttggacaatgaaccatgtagtccttgat 15190626  T
Q  301 ggaatgtccaattcacatttcatcaattcacttgctgaaatctcacgtggttcttgccatcaaatatctttacctccaacacttgaacgtttatttccaa 400  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15190627 ggaatgtccaattcacatttcatcaattcactggctgaaatctcacgtggttcttgccatcaaatatctgtacctccaacacttgaacgtttatttccaa 15190726  T
Q  401 atggaattcaacgtcccatacgatttcctttt 432  Q
    ||||||||||||||||||||||||||||||||    
T  15190727 atggaattcaacgtcccatacgatttcctttt 15190758  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 427 - 542
Target Start/End: Original strand, 15195735 - 15195850
Alignment:
Q  427 ccttttatgataaagacaccaaaaattaagatccgttctgatgaagaacaactcatcccaactgcgagaatattccattttacaaaggagaataccgcga 526  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  15195735 ccttttatgataaatacaccacaaattaagatccgttttgatgaagaacaactcatcccaactgagagaatattccattttacaaaggagaatatcgcga 15195834  T
Q  527 gactcaaattaaaagc 542  Q
    ||||||||||||||||    
T  15195835 gactcaaattaaaagc 15195850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 15744114 - 15744361
Alignment:
Q  1 cttgcattctttccaccctttgctggtcgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactct 100  Q
    |||| ||| |||||||||||| ||||||||||| |||| |  |||||||||||||||||||||||||||||| |  | |||||||||| ||||||||| |    
T  15744114 cttgaattttttccaccctttactggtcgtctcaaaatcaaggaacacgaagataacactatctcgtgttccatcacgtgcaacaatgttggtgcactat 15744213  T
Q  101 ttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctaccttccttccgttttccactccttctttccacttaacggagttat 200  Q
    ||||||||||   |||||| || ||  |||| |  |||||  | ||| |||| || | ||||    || ||||||| || |||||| |||||||||| |     
T  15744214 ttgttcatgctgcagcagaaaataccagtgtcgatgacatcattggagccacgtatcatcctaaaattctccactcattttttccatttaacggagtgaa 15744313  T
Q  201 aaactacgaaggtacatcacatccattgcttgcattccaagtaacaga 248  Q
    |||||||||||| ||||||   ||||| |||||| | |||||||||||    
T  15744314 aaactacgaagggacatcaatgccattacttgcagtacaagtaacaga 15744361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 34174908 - 34174836
Alignment:
Q  190 aacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaagtgacggta 262  Q
    |||||||||| ||||||| ||||||||||||| |||||||||||| | |||||||||||||||| ||| ||||    
T  34174908 aacggagttaaaaactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggta 34174836  T

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Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 11969718 - 11969636
Alignment:
Q  170 tccactccttctttccacttaacggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagtta 252  Q
    ||||||| || ||||||||||||||||||| |||||| ||||| |||||| | |||||||||||| |||||||||||||||||    
T  11969718 tccactcattttttccacttaacggagttagaaactatgaagggacatcagagccattgcttgcagtccaagtaacagagtta 11969636  T

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Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 316 - 431
Target Start/End: Complemental strand, 7629285 - 7629167
Alignment:
Q  316 catttcatcaattcacttgctgaaatctcacgtggttcttgccatca---aatatctttacctccaacacttgaacgtttatttccaaatggaattcaac 412  Q
    |||||||||||||||   ||||||||||||||| ||| ||| |||||   |||||||  ||||||||||  ||||||||  ||||||||||| |||||||    
T  7629285 catttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaac 7629186  T
Q  413 gtcccatacgatttccttt 431  Q
     ||||||||||||||||||    
T  7629185 ttcccatacgatttccttt 7629167  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 492 - 542
Target Start/End: Complemental strand, 8999415 - 8999365
Alignment:
Q  492 gagaatattccattttacaaaggagaataccgcgagactcaaattaaaagc 542  Q
    |||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  8999415 gagaatattccattttactaaggagaatatcacgagactcaaattaaaagc 8999365  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 7638019 - 7637891
Alignment:
Q  28 cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat 127  Q
    |||||| |||| || ||||||  ||| |||||| | ||||||||| ||  |||||||||||| |||| ||||||||| |||||   ||||||||| || |    
T  7638019 cgtctcaaaataacggaacacagagacaacactgtttcgtgttccgttatatgcaacaatgcaggtgtactctttgtccatgccgcagcagagaatactt 7637920  T
Q  128 gtgttgccgacattctaggatccacctac 156  Q
    ||||||| ||||| |||| | ||||||||    
T  7637919 gtgttgcagacatcctagaacccacctac 7637891  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 7606854 - 7606782
Alignment:
Q  359 atcaaatatctttacctccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttccttt 431  Q
    ||||||||||   ||| |||||||| || ||||  ||||||||||| ||||||| ||||||||||||||||||    
T  7606854 atcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaacttcccatacgatttccttt 7606782  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 431
Target Start/End: Complemental strand, 7615896 - 7615778
Alignment:
Q  316 catttcatcaattcacttgctgaaatctcacgtggttcttgccatca---aatatctttacctccaacacttgaacgtttatttccaaatggaattcaac 412  Q
    |||||||||||||||   |||||||| |||||| ||| ||| |||||   |||||||  ||| |||||||| || ||||  |||||||||||  ||||||    
T  7615896 catttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac 7615797  T
Q  413 gtcccatacgatttccttt 431  Q
      |||||||||||||||||    
T  7615796 agcccatacgatttccttt 7615778  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 431
Target Start/End: Complemental strand, 7637731 - 7637613
Alignment:
Q  316 catttcatcaattcacttgctgaaatctcacgtggttcttgccatca---aatatctttacctccaacacttgaacgtttatttccaaatggaattcaac 412  Q
    ||||||||||||||    ||||||||||||||| ||| ||| |||||   |||||||  ||| |||||||| || ||||  |||||||||||  ||||||    
T  7637731 catttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac 7637632  T
Q  413 gtcccatacgatttccttt 431  Q
    | || ||||||||||||||    
T  7637631 ggcctatacgatttccttt 7637613  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 431
Target Start/End: Original strand, 7655595 - 7655710
Alignment:
Q  316 catttcatcaattcacttgctgaaatctcacgtggttcttgccatcaaatatctttacctccaacacttgaacgtttatttccaaatggaattcaacgtc 415  Q
    ||||||||||||||    |||||||| |||||||||| |   ||||||||||||    | ||||| || || ||||  |||||||||||||||||||| |    
T  7655595 catttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtttccaaatggaattcaacgac 7655694  T
Q  416 ccatacgatttccttt 431  Q
    | ||||||||||||||    
T  7655695 ctatacgatttccttt 7655710  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 7399249 - 7399197
Alignment:
Q  201 aaactacgaaggtacatcacatccattgcttgcattccaagtaacagagttaa 253  Q
    |||||||||||| |||||||| ||| | |||||| | ||||||||||||||||    
T  7399249 aaactacgaagggacatcacaaccactacttgcagtacaagtaacagagttaa 7399197  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 8935268 - 8935396
Alignment:
Q  28 cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat 127  Q
    |||||| |||| || ||| || |||| || ||| ||||||| ||| ||  |||||||||||| |||| ||||||||| ||||| | | ||||||| || |    
T  8935268 cgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcaggtgtactctttgtccatgccagatcagagaatactt 8935367  T
Q  128 gtgttgccgacattctaggatccacctac 156  Q
    ||||||| |||||||||| | ||||||||    
T  8935368 gtgttgctgacattctagaacccacctac 8935396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 8934324 - 8934455
Alignment:
Q  25 ggtcgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaaca 124  Q
    ||||||||| |||| || ||| || |||| || ||| ||||||| ||| ||  |||||||||||| | || ||||||||| ||||| | | ||||||| |    
T  8934324 ggtcgtctcaaaataacggaataccaagacaaaactgtctcgtgctccgttatatgcaacaatgcagatgtactctttgtccatgccagatcagagaata 8934423  T
Q  125 catgtgttgccgacattctaggatccacctac 156  Q
    | |||||||| |||||||||| | ||||||||    
T  8934424 cttgtgttgctgacattctagaacccacctac 8934455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 8929922 - 8930000
Alignment:
Q  78 atgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacatgtgttgccgacattctaggatccacctac 156  Q
    |||||||||||| | || ||||||||||||||| | | ||||||| || |||||||| |||||||||| | ||||||||    
T  8929922 atgcaacaatgcagttgtactctttgttcatgccagatcagagaatacttgtgttgctgacattctagaacccacctac 8930000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 431
Target Start/End: Original strand, 8935556 - 8935674
Alignment:
Q  316 catttcatcaattcacttgctgaaatctcacgtggttcttgccatc---aaatatctttacctccaacacttgaacgtttatttccaaatggaattcaac 412  Q
    ||||||||||||||    ||||||||||||||| ||| ||| ||||   ||||||||  |||||||||||| |||||||  |||||  ||||  ||||||    
T  8935556 catttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaac 8935655  T
Q  413 gtcccatacgatttccttt 431  Q
    | || ||||||||||||||    
T  8935656 ggccaatacgatttccttt 8935674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 252
Target Start/End: Complemental strand, 8103428 - 8103204
Alignment:
Q  28 cgtctcgaaattacagaacacgaagataacactatctcgtgttcccttgcatgcaacaatgctggtgcactctttgttcatgcaaaagcagagaacacat 127  Q
    ||||| ||||| ||||| || ||||| ||||| || ||||||||  |  | ||||||||||| |||| ||||||||| ||||| | | | |||||||| |    
T  8103428 cgtctagaaataacagaccatgaagacaacaccatgtcgtgttcggtcacgtgcaacaatgccggtgtactctttgtccatgctacaactgagaacactt 8103329  T
Q  128 gtgttgccgacattctaggatccacctaccttccttccgttttccactccttctttccacttaacggagttataaactacgaaggtacatcacatccatt 227  Q
    |||| |  ||||| || |||| ||||||  ||||| || || || | || || | |||||| |||||| | | |||||||||||| |||||||| |||||    
T  8103328 gtgtaggtgacatacttggatgcacctatattcctcccattctcaattcattttatccactgaacggaatcaaaaactacgaaggcacatcacaaccatt 8103229  T
Q  228 gcttgcattccaagtaacagagtta 252  Q
    | ||||  | ||||| |||||||||    
T  8103228 gtttgccgtgcaagtgacagagtta 8103204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 8103076 - 8103025
Alignment:
Q  377 caacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttcc 428  Q
    |||||||||||||||  |||||| |||| |||||| ||||||||||||||||    
T  8103076 caacacttgaacgttggtttccagatggtattcaatgtcccatacgatttcc 8103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 40146913 - 40146961
Alignment:
Q  385 gaacgtttatttccaaatggaattcaacgtcccatacgatttcctttta 433  Q
    |||||||  ||||||| ||| ||||||| ||||||||||||||||||||    
T  40146913 gaacgttggtttccaagtggtattcaacatcccatacgatttcctttta 40146961  T

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Target: scaffold0190 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 5219 - 5160
Alignment:
Q  193 ggagttataaactacgaaggtacatcacatccattgcttgcattccaagtaacagagtta 252  Q
    ||||||| |||||||||||| |||||||| ||||| |||||| |||||||||| ||||||    
T  5219 ggagttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaacggagtta 5160  T

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