View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19929_low_18 (Length: 542)
Name: NF19929_low_18
Description: NF19929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19929_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 12 - 518
Target Start/End: Complemental strand, 2483480 - 2482975
Alignment:
| Q |
12 |
aacaatatagaataaaaaataatcacaaatatcttagttatccttgtattacccaagaaattgagaacaatagagggtactaaagaaaaataatgagctg |
111 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483480 |
aacaaaatagaataaaaaataatcacaaatatcttagttatccttgtattacccaagaaattgagaacaatagagggtactaaagaaaaataatgagctg |
2483381 |
T |
|
| Q |
112 |
atagccaagcagatacagaaatgtgaaaaggtaaataaggaaacatgaatctattaaatacaagtttcatctatctcttggtatatattttttcaaacag |
211 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2483380 |
atagctaagccgatacagaaatgtgaaaaggtaaatagggaagcatgaatctattaaatacaagtttcatctatctcttggtatatattttt-caaacag |
2483282 |
T |
|
| Q |
212 |
gaataaaaatcaagaaaatcgatcctacagggcatagaaaaaagggtttaaatgcagccaaccaccaagcaaaactgctacaaaataaaattattccata |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
2483281 |
gaataaaaatcaagaaaatcgatcctacagggcatagaaaaaagggtctaaatgcagccaaccaccaagcaaaactgccacaaaatcaaattattccata |
2483182 |
T |
|
| Q |
312 |
attgatggagaattaggccgtttaacttaaatcggaaaaaaccagcaccaatctcctactctatttgaaaccattcagtccataagaatactccaatatc |
411 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2483181 |
attgatggagaattatgccgtttaacttaaatcggaaaaaaccagcaccaatctcctactctatttaaaaccattcagtccataagaatactccaatatc |
2483082 |
T |
|
| Q |
412 |
cacaatcctaaaataatattcaaactccagtgcaaacattattcaaacaatttctggctagagtctcaaaccaacaacaattaaaaacaaacaattaatt |
511 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2483081 |
cacaatcctaaaataatattcacactccagtgcaaacattattcaaacaatttctagctagagtctcaaaccaacaacgattaaaaacaaacaattaatt |
2482982 |
T |
|
| Q |
512 |
cttgttc |
518 |
Q |
| |
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||||||| |
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| T |
2482981 |
cttgttc |
2482975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Original strand, 7439513 - 7440009
Alignment:
| Q |
20 |
agaataaaaaataatcacaaatatcttagttatccttgtattacccaagaaattgagaacaatagagggtactaaagaaaaataatgagctgatagccaa |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7439513 |
agaataaaaaataatcacaaatatcctagttatccttgtattacccaagaaattgagaacaatagagggtactaaagaaaaataatgagctgatagctaa |
7439612 |
T |
|
| Q |
120 |
gcagatacagaaatgtgaaaaggtaaataaggaaacatgaatctattaaatacaagtttcatctatctcttggtatatattttttcaaacaggaataaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7439613 |
tcagatacagaaatgtgaaaaggtatataggaaaacatgaatctatcaaatacaagtttcatctatctcttggtatatattttt-caaacaggaataaaa |
7439711 |
T |
|
| Q |
220 |
atcaagaaaatcgatcctacagggcatagaaaaaagggtttaaatgcagccaaccaccaagcaaaactgctacaaaataaaattattccataattgatgg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
7439712 |
atcaagaaaatcgatcctacagggcatagaaaaa-gggtctaaatgcagccaaccaccaagcaaaactgctacaaaatcaaattatttcataattgatgg |
7439810 |
T |
|
| Q |
320 |
agaattaggccgtttaacttaaatcggaaaaaaccagcaccaatctcctactctatttgaaaccattcagtccataagaatactccaatatccacaatcc |
419 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7439811 |
agaattatgcagtttaacttaaatcagaaaaaaccagcacaaatctcctactctatttgaaaccattcagtccataagaatactccaatatccacaatcc |
7439910 |
T |
|
| Q |
420 |
taaaataatattcaaactccagtgcaaacattattcaaacaatttctggctagagtctcaaaccaacaacaattaaaaacaaacaattaattcttgttc |
518 |
Q |
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|||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7439911 |
taaaataatattcacactccagtgcaaacattactcaaataatttctagctagagtctcaaaccaacaacaattaaaaacaaacaagtaattcttgttc |
7440009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 338 - 510
Target Start/End: Complemental strand, 2493672 - 2493500
Alignment:
| Q |
338 |
ttaaatcggaaaaaaccagcaccaatctcctactctatttgaaaccattcagtccataagaatactccaatatccacaatcctaaaataatattcaaact |
437 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||| | ||| |||||||||| |||| ||||| || || ||||| ||| |
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|
| T |
2493672 |
ttaaatcagaaaaaaccagcaccggtctcctactctatttgacaccgttcagtccacacgaacactccaatatacacactcctagaacaaaattcatact |
2493573 |
T |
|
| Q |
438 |
ccagtgcaaacattattcaaacaatttctggctagagtctcaaaccaacaacaattaaaaacaaacaattaat |
510 |
Q |
| |
|
| | |||| || |||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
2493572 |
cttaggaaaacggtactcaaacaacttctagctagagtctcaaaccaacaacaactaagaacaaacaattaat |
2493500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 480
Target Start/End: Original strand, 9564979 - 9565154
Alignment:
| Q |
305 |
ttccataattgatggagaattaggccgtttaacttaaatcggaaaaaaccagcaccaatctcctactctatttgaaaccattcagtccataagaatactc |
404 |
Q |
| |
|
||||||||| ||||||||||| || |||||||| ||| | |||||| ||||||||||||||||| |||||||||||||||||| | ||||| |||| |
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| T |
9564979 |
ttccataatcaatggagaattatgcaatttaacttcaatagaaaaaaaatagcaccaatctcctactgtatttgaaaccattcagtttaaaagaacactc |
9565078 |
T |
|
| Q |
405 |
caatatccacaatcctaaaataatattcaaactccagtgcaaacattattcaaacaatttctggctagagtctcaa |
480 |
Q |
| |
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||||| | || || |||||||| ||||| ||| ||||||||| | ||||||||||||| ||||| |||||| |
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|
| T |
9565079 |
aaatatactcactcataaaataaaattcatgctcttatgcaaacataactcaaacaatttctatctagactctcaa |
9565154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 426
Target Start/End: Original strand, 751942 - 752062
Alignment:
| Q |
305 |
ttccataattgatggagaattaggccgtttaacttaaatcggaaaaaaccagcaccaatctcctactctatttgaaaccattcagtccataagaatactc |
404 |
Q |
| |
|
||||||||| ||||||||||| || |||||||| ||| | |||||| ||||||||| ||||||| |||||||||||||||||| | ||||| |||| |
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| T |
751942 |
ttccataatcaatggagaattatgcaatttaacttcaatagaaaaaaat-agcaccaatttcctactgtatttgaaaccattcagtttaaaagaacactc |
752040 |
T |
|
| Q |
405 |
caatatccacaatcctaaaata |
426 |
Q |
| |
|
||||||| || |||||||||| |
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|
| T |
752041 |
taatatcctcactcctaaaata |
752062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 751791 - 751866
Alignment:
| Q |
40 |
atatcttagttatccttgtattacccaagaaattgagaacaatagagggtactaaagaaaaataatgagctgatag |
115 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| ||| || | |||||| |||||||||||| |||||| |||| |
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|
| T |
751791 |
atatcttagttattcttgttttacccaagaaatgaagagcagtgaagggtattaaagaaaaatattgagctcatag |
751866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 27477586 - 27477673
Alignment:
| Q |
152 |
aaacatgaatctattaaatacaagtttcatctatctcttggtatatatttttt-caaacaggaataaaaatcaagaaaatcgatccta |
238 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||| |||||| |
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|
| T |
27477586 |
aaacttgaatttattaaatacaagtttcatctatctcttggtatatatttttttccgtcgggaatacaaatcaagaaaatcaatccta |
27477673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 423
Target Start/End: Original strand, 2290755 - 2290832
Alignment:
| Q |
346 |
gaaaaaaccagcaccaatctcctactctatttgaaaccattcagtccataagaatactccaatatccacaatcctaaa |
423 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||| ||| |||| |||| | ||| |||||| |||||||| ||||||| |
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|
| T |
2290755 |
gaaaaaaccaacaccggtctccaactctatttgacacctttcattccaaatgaacactccagtatccacactcctaaa |
2290832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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